LOCUS       WQZ29569.1              1237 aa    PRT              BCT 29-DEC-2023
DEFINITION  Helicobacter pylori Hop family outer membrane protein HopL protein.
ACCESSION   CP079244-1052
PROTEIN_ID  WQZ29569.1
SOURCE      Helicobacter pylori
  ORGANISM  Helicobacter pylori
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Helicobacteraceae; Helicobacter.
REFERENCE   1  (bases 1 to 1570870)
  AUTHORS   Thorell,K., Munoz-Ramirez,Z.Y., Wang,D., Sandoval-Motta,S., Boscolo
            Agostini,R., Ghirotto,S., Torres,R.C., Falush,D., Camargo,M.C. and
            Rabkin,C.S.
  CONSRTM   HpGP Research Network
  TITLE     The Helicobacter pylori Genome Project: insights into H. pylori
            population structure from analysis of a worldwide collection of
            complete genomes
  JOURNAL   Nat Commun 14 (1), 8184 (2023)
   PUBMED   38081806
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1570870)
  AUTHORS   Camargo,M.C. and Rabkin,C.S.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUL-2021) IIB, National Cancer Institute, 9609
            Medical Center Dr., Rm. 6E110, Bethesda, MD 20892, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: HGAP v. 4
            Assembly Name          :: HpGP-TWN-021
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 2661x
            Sequencing Technology  :: PacBio Sequel II
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 07/16/2021 08:12:09
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 5.2
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,497
            CDSs (total)                      :: 1,452
            Genes (coding)                    :: 1,391
            CDSs (with protein)               :: 1,391
            Genes (RNA)                       :: 45
            rRNAs                             :: 2, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 2, 2 (5S, 16S, 23S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 44 of 61
            Pseudo Genes (incomplete)         :: 11 of 61
            Pseudo Genes (internal stop)      :: 18 of 61
            Pseudo Genes (multiple problems)  :: 12 of 61
            ##Genome-Annotation-Data-END##
FEATURES             Qualifiers
     source          /organism="Helicobacter pylori"
                     /mol_type="genomic DNA"
                     /strain="HpGP-TWN-021"
                     /isolation_source="Biopsy"
                     /host="Homo sapiens"
                     /db_xref="taxon:210"
                     /geo_loc_name="Taiwan"
                     /lat_lon="23.30 N 121.00 E"
                     /collected_by="Maria Camargo and Charles Rabkins"
     protein         /gene="hopL"
                     /locus_tag="E5P95_05425"
                     /gene_synonym="omp26"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000591296.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /transl_table=11
BEGIN
        1 MIKKAKKFIP FFLIGSLLAE DNGWYMSVGY QIGGTQQFIN NKQLLENQNI INSITQSAIN
       61 IAGPTTGLIT LSSQSVIEAL GYGVSNTVGN QLEGISNILN QIGKRKDFYS SRQISSISQQ
      121 IIGLKGSSDP LKAHSSQITA KLLSNTQSAF NEGIALSSNI ISSINSLNPS NNAKEVKAQL
      181 QNTAQSMTEL LQQIEHSITK TTSTTYAQSL LSNLTDAVNA SSNNTAYVSA LKNALTTLGV
      241 GYFPTTTTTH VVLNPPGQIV FYPTNSILGS TSSNSNNQQQ YNNTLLMNTL QGELSANTQN
      301 NPNGCTNQVQ CLEQFIQNLA PLAATPTSNN QANQQVQAIA QKLQSVAINT LDNNAINNTT
      361 YNLNNLHNAL NFQAYESTIE QYNNALKQIS WISFTEPKNL LKNTSNNYQI GTVTNAQGQN
      421 ISAYDCTSAT GSLSSNSGIS CSATSSTSNT NSANNTNSFD NSLVATSKIQ TIGGKEQIGV
      481 NSFNLVSQVW SVYSSLKTSE ANLQKNAQIL CPNGSNGSQN TCNNNNSSGG LSISGNSQLQ
      541 NILSSTSGTS ANTQAKSNAS KLKAMVMVNN EEEAKTTNLA QGSGPTTQSP NSTVMGALNT
      601 VLQNVNNFQQ SIQSAFQNQE SNIQAWANAI YNTNGSQSQY ITPNTNQDLR IQLRANFYQL
      661 INTINQQVPT DMSALIAQSQ QTQQASGETS NNNACASGMS GSNGNWCYQQ WSDSKAYYSG
      721 LQSALGYQTQ ATTQSGSSGG NSITYNVQQI TLTSNGLLNN IISSLKSFNS SGSNGGSSGN
      781 GNGTSQINTA YQMLTDASDG KLGTYSSNSG NNSSNNGYTP CNSTNGSNGT SGNNCYEPNK
      841 QQNATTATTS ETNLQKVYND AQKIANIIAS SGNNKGVENG LKQFFEALKS SNNLSSLCSS
      901 GNNNSATCTG GLINLLGAIP TNSVSDTNNL INLLTEFIKT AGFIQNNDNN SNNANLTSAF
      961 QAITSAISQG FQALQNDISP NAILTLLQEI TSNTTTIQSF SQTLRQLLGD KTFFMVQQKL
     1021 IDAMINARNQ VQNAQNQANS YGSQPILSQY VAAKSTQHGM SNGLGVGLGY KYFFGKARKL
     1081 GLRHYFFFDY GFSEIGLANQ SVKANIFAYG VGTDFLWNLF RRTYNTKALN FGLFAGVQLG
     1141 GATWLSSLRQ QIIDNWGNAN DIHPTNFQVA LNFGVRTNFA EFKRFAKKFH NQGVISQKSV
     1201 EFGIKVPLIN QAYLSSAGAD VSYRRLYTFY INYIMGF
//