LOCUS       WQZ29443.1              1019 aa    PRT              BCT 29-DEC-2023
DEFINITION  Helicobacter pylori CusA/CzcA family heavy metal efflux
            RND transporter protein.
ACCESSION   CP079244-918
PROTEIN_ID  WQZ29443.1
SOURCE      Helicobacter pylori
  ORGANISM  Helicobacter pylori
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Helicobacteraceae; Helicobacter.
REFERENCE   1  (bases 1 to 1570870)
  AUTHORS   Thorell,K., Munoz-Ramirez,Z.Y., Wang,D., Sandoval-Motta,S., Boscolo
            Agostini,R., Ghirotto,S., Torres,R.C., Falush,D., Camargo,M.C. and
            Rabkin,C.S.
  CONSRTM   HpGP Research Network
  TITLE     The Helicobacter pylori Genome Project: insights into H. pylori
            population structure from analysis of a worldwide collection of
            complete genomes
  JOURNAL   Nat Commun 14 (1), 8184 (2023)
   PUBMED   38081806
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1570870)
  AUTHORS   Camargo,M.C. and Rabkin,C.S.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUL-2021) IIB, National Cancer Institute, 9609
            Medical Center Dr., Rm. 6E110, Bethesda, MD 20892, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: HGAP v. 4
            Assembly Name          :: HpGP-TWN-021
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 2661x
            Sequencing Technology  :: PacBio Sequel II
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 07/16/2021 08:12:09
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 5.2
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,497
            CDSs (total)                      :: 1,452
            Genes (coding)                    :: 1,391
            CDSs (with protein)               :: 1,391
            Genes (RNA)                       :: 45
            rRNAs                             :: 2, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 2, 2 (5S, 16S, 23S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 44 of 61
            Pseudo Genes (incomplete)         :: 11 of 61
            Pseudo Genes (internal stop)      :: 18 of 61
            Pseudo Genes (multiple problems)  :: 12 of 61
            ##Genome-Annotation-Data-END##
FEATURES             Qualifiers
     source          /organism="Helicobacter pylori"
                     /mol_type="genomic DNA"
                     /strain="HpGP-TWN-021"
                     /isolation_source="Biopsy"
                     /host="Homo sapiens"
                     /db_xref="taxon:210"
                     /geo_loc_name="Taiwan"
                     /lat_lon="23.30 N 121.00 E"
                     /collected_by="Maria Camargo and Charles Rabkins"
     protein         /locus_tag="E5P95_04705"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014658495.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /transl_table=11
BEGIN
        1 MLASIIEFSL RQRVIVIVCA ILILFFGTYS FINTPVDAFP DISPTQVKII LKLPGSSPEE
       61 MENNIVRPLE LELLGLKGQK SLRSVSKYSI SDITIDFDDS VDIYLARNIV NERLSSVMKD
      121 LPVGVEGGMA PIVTPLSDIF MFTIDGNITE IEKRQLLDFV IRPQLRMISG VADVNSIGGF
      181 SRAFVVVPDF NDMARLGVSI SDLEEAVRVN LRNSGAGRVD RDGETFLVKI QTASLSLEDI
      241 GKITVSTNLG HLHIKDFAKV ISQSRTRLGF VTKDGVGETT EGLVLSLKDA NTKEIITQVY
      301 QKLEELKPFL PSGVSINVFY DRSEFTQKAI ATVSKTLIEA VVLIIIMLFL FLGNLRASVA
      361 VGVILPLSLS VAFIFIKISD LTLNLMSLGG LVIAIGMLID SAVVVVENAF EKLSANTKTT
      421 KLHAIYRSCK EIAVSVVSGV VIIIVFFVPI LTLQGLEGKM FRPLAQSIVY ALLGTLVLSI
      481 TIIPVVSSLV LKATPHSETF LTRFLNRIYA PLLDFFVHNP KKVILGAFVF LIASLSLFPF
      541 VGKNFMPALD EGDVVLSVET TPSISLDQSR DFMLNIESAI KKHVKEVKSI VARTGSDELG
      601 LDLGGLNQTD TFISFIPKKE WSVKTKDELL EKIIDSLKDF KGINFSFTQP IEMRISEMLT
      661 GVRGDLAVKI FGDEISELNK LSFQIAQALK GIKGSSEVLT TLNEGVNYLY VTPNKESMAD
      721 VGITSDEFSK FLKSALEGLV VDVIPTGISR TPVMIRQESD FASSITKIKS LALTSKYGVL
      781 VPITSIAKIE EVDGPVSVVR ENSMRMSVVR SNVVGRDLNS FVEEAKKVIT QNIKLPPSYY
      841 ITYGGQFENQ QRANKRLSTV IPLSILAIFF ILFFTFKSIP LALLILLNIP FAVTGGLIAL
      901 FAVGEYISVP ASVGFIALFG IAVLNGVVMI GYFKELLLQG KSVEECVLLG AKRRLRPVLM
      961 TACIAGLGLI PLLFSHSVGS EVQKPLAIVV LGGLVTSSAL TLLLLPPMFM LIAKKIKIN
//