LOCUS       WQZ29401.1              1085 aa    PRT              BCT 29-DEC-2023
DEFINITION  Helicobacter pylori carbamoyl-phosphate synthase large
            subunit protein.
ACCESSION   CP079244-872
PROTEIN_ID  WQZ29401.1
SOURCE      Helicobacter pylori
  ORGANISM  Helicobacter pylori
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Helicobacteraceae; Helicobacter.
REFERENCE   1  (bases 1 to 1570870)
  AUTHORS   Thorell,K., Munoz-Ramirez,Z.Y., Wang,D., Sandoval-Motta,S., Boscolo
            Agostini,R., Ghirotto,S., Torres,R.C., Falush,D., Camargo,M.C. and
            Rabkin,C.S.
  CONSRTM   HpGP Research Network
  TITLE     The Helicobacter pylori Genome Project: insights into H. pylori
            population structure from analysis of a worldwide collection of
            complete genomes
  JOURNAL   Nat Commun 14 (1), 8184 (2023)
   PUBMED   38081806
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1570870)
  AUTHORS   Camargo,M.C. and Rabkin,C.S.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUL-2021) IIB, National Cancer Institute, 9609
            Medical Center Dr., Rm. 6E110, Bethesda, MD 20892, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: HGAP v. 4
            Assembly Name          :: HpGP-TWN-021
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 2661x
            Sequencing Technology  :: PacBio Sequel II
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 07/16/2021 08:12:09
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 5.2
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,497
            CDSs (total)                      :: 1,452
            Genes (coding)                    :: 1,391
            CDSs (with protein)               :: 1,391
            Genes (RNA)                       :: 45
            rRNAs                             :: 2, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 2, 2 (5S, 16S, 23S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 44 of 61
            Pseudo Genes (incomplete)         :: 11 of 61
            Pseudo Genes (internal stop)      :: 18 of 61
            Pseudo Genes (multiple problems)  :: 12 of 61
            ##Genome-Annotation-Data-END##
FEATURES             Qualifiers
     source          /organism="Helicobacter pylori"
                     /mol_type="genomic DNA"
                     /strain="HpGP-TWN-021"
                     /isolation_source="Biopsy"
                     /host="Homo sapiens"
                     /db_xref="taxon:210"
                     /geo_loc_name="Taiwan"
                     /lat_lon="23.30 N 121.00 E"
                     /collected_by="Maria Camargo and Charles Rabkins"
     protein         /gene="carB"
                     /locus_tag="E5P95_04455"
                     /EC_number="6.3.5.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001126513.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /transl_table=11
BEGIN
        1 MPKRTDISNI LLIGSGPIVI GQACEFDYSG TQSCKTLKSL GYRVILINSN PATVMTDPEF
       61 SHQTYIQPIT PENIAAIIKK EKIDAILPTM GGQTALNAVM QMHQKGMLEG VELLGAKIEA
      121 IKKGEDRQAF KEAMLKIGMD LPKGRYAYNE LEALEAINEI GFPAIIRASF TLAGGGSGVA
      181 YNIEEFQELA KNALDASPIN EILIEESLLG WKEYEMEVIR DSKDNCIIVC CIENIDPMGV
      241 HTGDSITIAP SLTLTDKEYQ RMRDASFAIL REIGVDTGGS NVQFAIHPET LRMVVIEMNP
      301 RVSRSSALAS KATGFPIAKV ATMLAVGFSL DEIQNDITNT PASFEPSLDY IVVKIPRFAF
      361 EKFAGVSSTL GTSMKSIGEV MAIGGNFLEA LQKALCSLEN NWLGFESLSK DLEMIKKEIR
      421 RPNFKRLLYI ADAFRLGVCV DEVFELCQID RWFLSQIQKL VKTEESINSS VLTDAKKLRG
      481 LKNLGFSDAR IAAKIKENEN LEVSPFEVEL ARMNLQIAPN FEEVDTCAAE FLSLTPYLYS
      541 TYAPNPLPPI ENKQEKQEKK ILIIGSGPNR IGQGIEFDYC CVHASFALKD LNIKSVMLNC
      601 NPETVSTDYD TSDTLYFEPI HFECVKSIIQ REHVDGIIVH FGGQTPLKLA KDLAKMQAPI
      661 IGTPFKVIDI AEDREKFSLF LKELDIKQPE NGMAKSVDEA YSIANVIGFP IIVRPSYVLG
      721 GQHMQILENI EELHHYLESV THALEISPKN PLLIDKFLEK AVELDVDAIC DKKEVYIAGI
      781 LQHIEEAGIH SGDSACFIPS TLKAEILDEI ERVSAKIALH LGVVGLLNIQ FAVHHNSLYL
      841 IEVNPRASRT VPFLSKALGV PLAKVATRVM VSEDLKEALK FYDKKNIVGY SKGVYKPKMP
      901 HFVALKEAVF PFNKLYGSDL ILGPEMKSTG EVMGIARSLG LAFFKAQTAC FNPIKNKGLI
      961 FVSIKDKDKE EACVLMKRLV QLGFELCATE GTHKALEKAG VESLKVLKIS EGRPNVMDLM
     1021 MNGEISMAIN TSDHKSQDDA KLIRASVLKN HVSYFTTLSA IEVLILALEE SSKEDELLAL
     1081 QDYLV
//