LOCUS WQZ29314.1 553 aa PRT BCT 29-DEC-2023 DEFINITION Helicobacter pylori ABC transporter permease/substrate- binding protein protein. ACCESSION CP079244-782 PROTEIN_ID WQZ29314.1 SOURCE Helicobacter pylori ORGANISM Helicobacter pylori Bacteria; Campylobacterota; Epsilonproteobacteria; Campylobacterales; Helicobacteraceae; Helicobacter. REFERENCE 1 (bases 1 to 1570870) AUTHORS Thorell,K., Munoz-Ramirez,Z.Y., Wang,D., Sandoval-Motta,S., Boscolo Agostini,R., Ghirotto,S., Torres,R.C., Falush,D., Camargo,M.C. and Rabkin,C.S. CONSRTM HpGP Research Network TITLE The Helicobacter pylori Genome Project: insights into H. pylori population structure from analysis of a worldwide collection of complete genomes JOURNAL Nat Commun 14 (1), 8184 (2023) PUBMED 38081806 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 1570870) AUTHORS Camargo,M.C. and Rabkin,C.S. TITLE Direct Submission JOURNAL Submitted (15-JUL-2021) IIB, National Cancer Institute, 9609 Medical Center Dr., Rm. 6E110, Bethesda, MD 20892, USA COMMENT The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Assembly-Data-START## Assembly Method :: HGAP v. 4 Assembly Name :: HpGP-TWN-021 Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 2661x Sequencing Technology :: PacBio Sequel II ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Date :: 07/16/2021 08:12:09 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 5.2 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region Genes (total) :: 1,497 CDSs (total) :: 1,452 Genes (coding) :: 1,391 CDSs (with protein) :: 1,391 Genes (RNA) :: 45 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 36 ncRNAs :: 3 Pseudo Genes (total) :: 61 CDSs (without protein) :: 61 Pseudo Genes (ambiguous residues) :: 0 of 61 Pseudo Genes (frameshifted) :: 44 of 61 Pseudo Genes (incomplete) :: 11 of 61 Pseudo Genes (internal stop) :: 18 of 61 Pseudo Genes (multiple problems) :: 12 of 61 ##Genome-Annotation-Data-END## FEATURES Qualifiers source /organism="Helicobacter pylori" /mol_type="genomic DNA" /strain="HpGP-TWN-021" /isolation_source="Biopsy" /host="Homo sapiens" /db_xref="taxon:210" /geo_loc_name="Taiwan" /lat_lon="23.30 N 121.00 E" /collected_by="Maria Camargo and Charles Rabkins" protein /locus_tag="E5P95_03990" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_003015174.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /transl_table=11 BEGIN 1 MPSMGVFKHL IKELYEWLLH SVDVITQHLV AIALKISVVK YLIKEFHDRF TYFIDLLAQH 61 FIIVALSSFL VLVFGVLIGI FVFYNSKARA FLLPIVNFLY TIPSLALFAL FIPLIGVGLK 121 NALLVLVLYG LLPIVHSTYN ALKEVREEVI KAAIGLGCNP KELFFRVRFL LAIPQILVGL 181 RIAVVMLVAM AGIGALIGAG GLGQAIFRGL NTQNTTLLVA GSLIIALFSV LADKFVSVFQ 241 HENALQRLFS QNATKKQKRK VYLNLAVFLF LLLASALWLI PRNAIEEKPL VVATKPSSEQ 301 YILGEILSLL LEKHHIPIKR AFGIGGGTMN IHPALIRGDF DLYVEYTGTA WVNTLKNPLT 361 QKVDFETIKK RYEKEFNLLW VGLLGFNNTY SLAISKEYAQ KYAIETFSDL AFHSPNFDFG 421 AEFDFFERED AFKGLVKAYR FHFRSLHEMD INLRYKSFES HKINALDVFT TDAQIKELDL 481 KVLKDDKGFF PNYQAGIVMR KEIVKKYPEA LKILEKLDSK LSDEVMQDLN YQVEVLKKTP 541 QIVAKEFLER LGL //