LOCUS WKY08628.1 1924 aa PRT INV 31-JUL-2023
DEFINITION Nippostrongylus brasiliensis hypothetical protein protein.
ACCESSION CP130735-5453
PROTEIN_ID WKY08628.1
SOURCE Nippostrongylus brasiliensis
ORGANISM Nippostrongylus brasiliensis
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
Rhabditina; Rhabditomorpha; Strongyloidea; Heligmosomidae;
Nippostrongylus.
REFERENCE 1 (bases 1 to 50441521)
AUTHORS Schwarz,E.M., Baniya,A., Rodriguez,I.M., Lu,D., Bobardt,S.D.,
Anesko,K., Baker,L., Gouil,Q., Ritchie,M.E., Jex,A.R., Nair,M.G.
and Dillman,A.R.
TITLE A Nippostrongylus brasiliensis chromosomal reference genome and its
transcriptomics
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 50441521)
AUTHORS Schwarz,E.M., Baniya,A., Rodriguez,I.M., Lu,D., Bobardt,S.D.,
Anesko,K., Baker,L., Gouil,Q., Ritchie,M.E., Jex,A.R., Nair,M.G.
and Dillman,A.R.
TITLE Direct Submission
JOURNAL Submitted (16-JUL-2023) Molecular Biology and Genetics, Cornell
University, Biotechnology Bldg., 526 Campus Road, Ithaca, NY 14853,
USA
COMMENT ##Genome-Assembly-Data-START##
Assembly Date :: 03-JUN-2022
Assembly Method :: raven v. 1.7.0; sourmash v. MAR-2022;
racon v. 1.4.20; POLCA (in MaSuRCA) v.
4.0.8; 3d-dna v. 180419
Assembly Name :: Nippo_1.0
Genome Representation :: Full
Expected Final Version :: Yes
Genome Coverage :: 76.0x
Sequencing Technology :: Oxford Nanopore PromethION; Illumina
HiSeq; Omni-C
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Nippostrongylus brasiliensis"
/mol_type="genomic DNA"
/strain="MIMR"
/db_xref="taxon:27835"
/chromosome="IV"
/sex="pooled male and female"
/tissue_type="Whole animal"
/dev_stage="Adults"
/geo_loc_name="USA: Laboratory of Meera Nair, UC Riverside
School of Medicine, Riverside, CA"
/collection_date="2021/2022"
protein /locus_tag="Q1695_007842"
/note="NIPPO_CHRIV.G11682.T2"
intron_pos 29:1 (1/37)
intron_pos 115:0 (2/37)
intron_pos 144:1 (3/37)
intron_pos 181:2 (4/37)
intron_pos 219:1 (5/37)
intron_pos 280:2 (6/37)
intron_pos 319:2 (7/37)
intron_pos 377:1 (8/37)
intron_pos 429:0 (9/37)
intron_pos 507:0 (10/37)
intron_pos 540:0 (11/37)
intron_pos 598:1 (12/37)
intron_pos 652:0 (13/37)
intron_pos 712:0 (14/37)
intron_pos 765:1 (15/37)
intron_pos 792:0 (16/37)
intron_pos 820:2 (17/37)
intron_pos 863:0 (18/37)
intron_pos 901:0 (19/37)
intron_pos 964:1 (20/37)
intron_pos 1030:2 (21/37)
intron_pos 1063:0 (22/37)
intron_pos 1105:0 (23/37)
intron_pos 1162:0 (24/37)
intron_pos 1203:2 (25/37)
intron_pos 1291:0 (26/37)
intron_pos 1332:0 (27/37)
intron_pos 1368:0 (28/37)
intron_pos 1489:1 (29/37)
intron_pos 1518:1 (30/37)
intron_pos 1603:0 (31/37)
intron_pos 1635:1 (32/37)
intron_pos 1726:0 (33/37)
intron_pos 1790:0 (34/37)
intron_pos 1824:0 (35/37)
intron_pos 1881:1 (36/37)
intron_pos 1906:1 (37/37)
BEGIN
1 MANNSCEDSP FVDPATISLG PPSSLVVSAE SVPGPETEAS SEVERESSEL LAAQEQSDDL
61 GVTEGSTLKD EQLATTPATP VKRYVIADSD DDITDEEDNL GRLQESDGKP VFITDHDYAV
121 CYDPNVDKPK TVDDFPIIPG LSELGLVSDD LELPPEQHLP PNRLPASHMG YEQREPNIIN
181 RSPASVREGV YRTNDNQSGY MARPARPSIQ TQSYRSVPDR GLPHTQQPQH QQQHFFVAGY
241 NGASGARRVV TTAPMSSSPM VQKRTAPRIV STPSQIRTSG ARMSTSAPHL TMQQPPHRQA
301 NAVTAAPPVP RQVDPPPHRS FHQGQEPSSH RLLLMPSGAG SRVAFSPADP SQAALANAPA
361 PLIVPGRGTR PIVRGRGGSV SGRAKKESIS GVSGEETSPA HSPHTASRLP VTASPQCNRT
421 TAVSPRKQVH FSDGVTVGPG VGGASSPIRM QGMPPTALHP PPLESTAQQV GMRSPPKFAT
481 TRPRPIGAPA APHPGHVPAQ EVTSPPRVGH TAPETPPLPE NFIDPEAVPQ HFDDSEAQKT
541 STTLPPEVMA AATSLSAEAD VNHPQWTNND ISAEEIKAKI EAISREIAQA CISDIRFEAQ
601 AREKRRALGD SPGSMRRRSG PETVLSGGEE QDSSGSGPGL GPRGRGRPKG SGRARSSLSS
661 SSTTSSAAAG TPTVHPDGLE GPYGSTRVAG YQSPRTSART TAARGNANHT TVYDGSMAPE
721 LPPPLPPIGN VQSLRGQAPQ VPSSHLPSQQ QVPMEHISQG YQERGVNGVS PSDDLANVST
781 DPSSDEDEPA EEAEWGDYVT RCLCEMQHND EWMVECEQCN VWQHMKCMGL DPRKFNQNDT
841 YLCEFCKPRP LKWTKKQAQE LQLKQLKAVS REKERKMAEK LRRREERKRA KLNRRLKERN
901 HAKAVKRGPA AFKKFQMISR NEYTKRAKQM LALFDTTAGA QSILDSSRDL KRGKRMFVAP
961 DIEGLVSTEA IKQDDVIMEY IGHVCLPDEC PGRLQRGALQ PYCVLYNGLG QNLLCIDARR
1021 QGSDARFARR CCRSNSTLKH VLLNGCIYVM LVASERIEKG TEVTIPFDCD FRDTLVPVEC
1081 ACGEDPNCFM KQFNDSLRCK AAYEERPHHD AAQRSQHSNG TTSSGRRIAA QTPQKNKSDN
1141 RGRPKGSGKK EKVVEDTPRK KGPVGRKPKK VGIRLRRHSD SKNTKSSDES MEQGTDADTG
1201 ESKPENVTDE KRETSEVEVA SPAPVPTAED ATEVETKVEE EAKVSTEVEE PASPKKQADG
1261 PKSPKKADEP KSPKKEAAEA DKPGSVSPKK EEQPTSGKRR SSTGSGRFPR REAIELKEVM
1321 DYTLPEDRNK PSREERKLAA ALAAIERKEE KEKKKAIAHK ESGEAKRGPG RPARARSGST
1381 GTSKGGRRIS ERQAENASKD KKPAESTPKE KRQAESAAKE KRHSESATKE KRQSESTPKT
1441 ESAPKEKRPA ENATKEKKQM ESAVKEKKVK EETAEEQPVR ESPRGKKKRE DSKENEIEVA
1501 TIAQPPRKRW AAAVKENEAA QRASSPEVTS SSSATSNVDV TSSDSITPSS VGGKKLWLRR
1561 HAAESISEES SQNNDVAVSP EPLSCAADST SDITIPQHQR IQMSPPLKKR RHLLDACQSD
1621 EHVAATVLAQ MGAKAEGFRF HWNMALRFLT PKFSGVNDDF TLAVIVRKPL PLPTPRPASA
1681 PVPVTEPIPA PTATPASVPS VSVEVPEATP TSSQAPMVSP VEVKKAKRIT LEDYKKRRST
1741 MGSTENSGSS AGTSSAPTGT GSISDVKTRL GDGPVRPTRS FIPTMDMPLD QNPVLRPLDT
1801 SIPIPPLGMP PDLEVVKKMI LQESCIPAPP VPPSLPPPPE QPPVSGAVAS SSDMSIGSSC
1861 SESGEERMSL ADRLAKEFGV GTAGTPRQSP KALLSPAALR MMSLRDVPPP PPPPGPRPTR
1921 NTRW
//