LOCUS       WKY08262.1              1654 aa    PRT              INV 31-JUL-2023
DEFINITION  Nippostrongylus brasiliensis hypothetical protein protein.
ACCESSION   CP130735-5087
PROTEIN_ID  WKY08262.1
SOURCE      Nippostrongylus brasiliensis
  ORGANISM  Nippostrongylus brasiliensis
            Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
            Rhabditina; Rhabditomorpha; Strongyloidea; Heligmosomidae;
            Nippostrongylus.
REFERENCE   1  (bases 1 to 50441521)
  AUTHORS   Schwarz,E.M., Baniya,A., Rodriguez,I.M., Lu,D., Bobardt,S.D.,
            Anesko,K., Baker,L., Gouil,Q., Ritchie,M.E., Jex,A.R., Nair,M.G.
            and Dillman,A.R.
  TITLE     A Nippostrongylus brasiliensis chromosomal reference genome and its
            transcriptomics
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 50441521)
  AUTHORS   Schwarz,E.M., Baniya,A., Rodriguez,I.M., Lu,D., Bobardt,S.D.,
            Anesko,K., Baker,L., Gouil,Q., Ritchie,M.E., Jex,A.R., Nair,M.G.
            and Dillman,A.R.
  TITLE     Direct Submission
  JOURNAL   Submitted (16-JUL-2023) Molecular Biology and Genetics, Cornell
            University, Biotechnology Bldg., 526 Campus Road, Ithaca, NY 14853,
            USA
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Date          :: 03-JUN-2022
            Assembly Method        :: raven v. 1.7.0; sourmash v. MAR-2022;
                                      racon v. 1.4.20; POLCA (in MaSuRCA) v.
                                      4.0.8; 3d-dna v. 180419
            Assembly Name          :: Nippo_1.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 76.0x
            Sequencing Technology  :: Oxford Nanopore PromethION; Illumina
                                      HiSeq; Omni-C
            ##Genome-Assembly-Data-END##
FEATURES             Qualifiers
     source          /organism="Nippostrongylus brasiliensis"
                     /mol_type="genomic DNA"
                     /strain="MIMR"
                     /db_xref="taxon:27835"
                     /chromosome="IV"
                     /sex="pooled male and female"
                     /tissue_type="Whole animal"
                     /dev_stage="Adults"
                     /geo_loc_name="USA: Laboratory of Meera Nair, UC Riverside
                     School of Medicine, Riverside, CA"
                     /collection_date="2021/2022"
     protein         /locus_tag="Q1695_007624"
                     /note="NIPPO_CHRIV.G11464.T4"
     intron_pos      5:2 (1/25)
     intron_pos      36:0 (2/25)
     intron_pos      70:0 (3/25)
     intron_pos      107:0 (4/25)
     intron_pos      141:0 (5/25)
     intron_pos      209:1 (6/25)
     intron_pos      244:0 (7/25)
     intron_pos      288:2 (8/25)
     intron_pos      355:2 (9/25)
     intron_pos      389:0 (10/25)
     intron_pos      438:0 (11/25)
     intron_pos      500:0 (12/25)
     intron_pos      525:2 (13/25)
     intron_pos      575:1 (14/25)
     intron_pos      607:0 (15/25)
     intron_pos      642:1 (16/25)
     intron_pos      713:2 (17/25)
     intron_pos      767:2 (18/25)
     intron_pos      800:2 (19/25)
     intron_pos      1315:0 (20/25)
     intron_pos      1354:0 (21/25)
     intron_pos      1395:0 (22/25)
     intron_pos      1477:0 (23/25)
     intron_pos      1542:0 (24/25)
     intron_pos      1614:1 (25/25)
BEGIN
        1 MSFQEEDEWF GLGSGFVLDD AFKCASPLGA DSSLQVPLRE PSPIAVSPQN LMDFNFGDNS
       61 LAVPMREFGF QSGNDPPRLS PVSSSYQSMA PLQNMSYEMS STTVVQEETY NSFEQPSIVV
      121 NGHYQTIDQQ IIQPQQGYFQ TISEPPQQAV LTTSHQQSSS GNVGAAQQGS VVQQMLSTPP
      181 TRQTPTPQQP RQRPIQPKTQ NNGRKRASVN MHSSATNKSA KVETSANNTN QTEVRFSMSA
      241 LTRITEIGAE MAQLQEQQEK LGINNSQRLS ELQAQRASIL YEALSSQNVG ETVLSQVKQV
      301 AAAAAPTPQP RQTPRSRAAH SNRPVHFETR SDSPQYQPQM YLASHNQYPS TSTAQFQEYS
      361 PSTGNQAQVV RQQEQMPVRQ QTQQRVYRTQ NAGATVYHAQ QQLPPGTVYV QNVPQAAQAQ
      421 YASPQPTVGE VVRQQHQLRQ VSGAQQVIVQ QVAAPQVVVA TATGAQPVAG AQIRSQILQH
      481 SPLPAQIVIA PAVPATPQLL VVEPRPSPAQ TAKRLEEKRA GRLSRLRNYF ENLHGALANP
      541 DTDTPFSDLR DVLQRLLPYH AYGEPDFSEE HLEQFDVNLL RTQINLSEQR KRLEKRMRKV
      601 FYDEALNGAE SEERNLLLYL DGEYEKRKLE EEKEIVKQGN IESFVRESAI VAALRDSDRV
      661 VEEKPKITPP PTKPSSSKSL AQQYEYHPFD EVPAVFSPYK SPSPFKSPAS SIRSPSPCKS
      721 PCTSSYSPRI RARNASTSHY MSPSPLSEQT PPRARPTAKS RKTSESIALE KNDVSKAALD
      781 VHTAPSPLPN ASSRRSTPSR RTAERDDSSD CPSVKSPPSR VPLELAGDPF STSSPSSHTA
      841 KAKFSSPVPS SDRSAAKKVS PVEVPAIVTQ GQHSSKKEPR IQSPPRFSSR KDSSMDCLSN
      901 SDRVSAKKES SADIPAAPPL GRGLKKKSSV VPESPATPCP TEGAAKGELS VESPFASTRS
      961 HDSVRKTMQQ EAPSAQHRGS GKRASAVDLP TALDRSDEPE KKYAPPGKKD MTEESSVPRT
     1021 PDHDPPRKEA TSATHNIPLP PRLSSRKNLE PATKKDMPVK KDTPAASLSG LTAPQDSTRK
     1081 EVTTKPAIPI PPRLSSRRSS VAESTKEQQQ VEPPKTFPVP RNSAKKEATP LPPPVPPPPR
     1141 LAFKKGSPAV PLSARIPPKR DAATTDSTAE LTSNSIPTKR DEVLEAETSS VSDRKDLPSE
     1201 SPPVDAPGRL PAKKELLSRA RRGVPLEMRS PPAHTSIATP VVVGRTGRDD DESDGSGSPE
     1261 LGIDDVIPMA VSPPPASHVS EKLNAALQNK PGSLLQSKPQ RPIPVPPPLP HRKEKLISTP
     1321 ERTSSPVVKQ ENMKPSVKVE EEKPVERFRF KPQVPRPTPV SPLKPSAPKR DSVGDAGLIG
     1381 KDINCRSNNN HVEKMSNCAR PPPIRLKLKL GGKEVCIENN ENKEKDTEKK HKKHKKKKKE
     1441 RHKEHGTDHK HSKDKVLSKE ERKLLKKKLK EGASPQELVA VTSNGVRMKL KFGVGSQSFG
     1501 AAAAAAPRDS GVSRNEVHEA KLKGNISDSE PCTSKASAPV THAPPRIPRL KIRFGADSPA
     1561 LVISPPKSEP EAGQTNQQRP DAVDVSEALK ESKPGSVTTA APSSEEPLEF EFSDDSDTEA
     1621 ERLRVATDKA LRAMTSLPGV PSTSVLPWST QEAP
//