LOCUS WKY08109.1 1919 aa PRT INV 31-JUL-2023
DEFINITION Nippostrongylus brasiliensis hypothetical protein protein.
ACCESSION CP130735-4934
PROTEIN_ID WKY08109.1
SOURCE Nippostrongylus brasiliensis
ORGANISM Nippostrongylus brasiliensis
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
Rhabditina; Rhabditomorpha; Strongyloidea; Heligmosomidae;
Nippostrongylus.
REFERENCE 1 (bases 1 to 50441521)
AUTHORS Schwarz,E.M., Baniya,A., Rodriguez,I.M., Lu,D., Bobardt,S.D.,
Anesko,K., Baker,L., Gouil,Q., Ritchie,M.E., Jex,A.R., Nair,M.G.
and Dillman,A.R.
TITLE A Nippostrongylus brasiliensis chromosomal reference genome and its
transcriptomics
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 50441521)
AUTHORS Schwarz,E.M., Baniya,A., Rodriguez,I.M., Lu,D., Bobardt,S.D.,
Anesko,K., Baker,L., Gouil,Q., Ritchie,M.E., Jex,A.R., Nair,M.G.
and Dillman,A.R.
TITLE Direct Submission
JOURNAL Submitted (16-JUL-2023) Molecular Biology and Genetics, Cornell
University, Biotechnology Bldg., 526 Campus Road, Ithaca, NY 14853,
USA
COMMENT ##Genome-Assembly-Data-START##
Assembly Date :: 03-JUN-2022
Assembly Method :: raven v. 1.7.0; sourmash v. MAR-2022;
racon v. 1.4.20; POLCA (in MaSuRCA) v.
4.0.8; 3d-dna v. 180419
Assembly Name :: Nippo_1.0
Genome Representation :: Full
Expected Final Version :: Yes
Genome Coverage :: 76.0x
Sequencing Technology :: Oxford Nanopore PromethION; Illumina
HiSeq; Omni-C
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Nippostrongylus brasiliensis"
/mol_type="genomic DNA"
/strain="MIMR"
/db_xref="taxon:27835"
/chromosome="IV"
/sex="pooled male and female"
/tissue_type="Whole animal"
/dev_stage="Adults"
/geo_loc_name="USA: Laboratory of Meera Nair, UC Riverside
School of Medicine, Riverside, CA"
/collection_date="2021/2022"
protein /locus_tag="Q1695_007532"
/note="NIPPO_CHRIV.G11372.T1"
intron_pos 31:2 (1/47)
intron_pos 98:2 (2/47)
intron_pos 128:1 (3/47)
intron_pos 160:2 (4/47)
intron_pos 230:0 (5/47)
intron_pos 287:0 (6/47)
intron_pos 313:2 (7/47)
intron_pos 346:0 (8/47)
intron_pos 392:0 (9/47)
intron_pos 419:1 (10/47)
intron_pos 458:0 (11/47)
intron_pos 480:0 (12/47)
intron_pos 507:0 (13/47)
intron_pos 552:0 (14/47)
intron_pos 579:1 (15/47)
intron_pos 637:0 (16/47)
intron_pos 666:2 (17/47)
intron_pos 711:0 (18/47)
intron_pos 750:0 (19/47)
intron_pos 807:0 (20/47)
intron_pos 850:0 (21/47)
intron_pos 905:1 (22/47)
intron_pos 945:0 (23/47)
intron_pos 1014:0 (24/47)
intron_pos 1052:2 (25/47)
intron_pos 1090:2 (26/47)
intron_pos 1123:2 (27/47)
intron_pos 1162:1 (28/47)
intron_pos 1190:2 (29/47)
intron_pos 1242:2 (30/47)
intron_pos 1287:0 (31/47)
intron_pos 1331:0 (32/47)
intron_pos 1364:2 (33/47)
intron_pos 1399:0 (34/47)
intron_pos 1428:1 (35/47)
intron_pos 1450:0 (36/47)
intron_pos 1484:1 (37/47)
intron_pos 1535:0 (38/47)
intron_pos 1568:2 (39/47)
intron_pos 1596:0 (40/47)
intron_pos 1644:0 (41/47)
intron_pos 1690:0 (42/47)
intron_pos 1731:2 (43/47)
intron_pos 1781:1 (44/47)
intron_pos 1824:2 (45/47)
intron_pos 1856:0 (46/47)
intron_pos 1888:2 (47/47)
BEGIN
1 MFGQVIESIY NFYELITRKC SIFNKSLIVR VHQRENITIV RRSPLLSRVL FTLFDRPHLL
61 WCTNEIVFNL LSAIVQPQCD NRSMLKLGQA IAATLPTAAE DLAMESKFPF HISELHNQLI
121 ANQKPVEGKP SVLYMVYVRN RLLNMIANFL SHSSPPLNQH MSDQIVRVLG FDWIYCLLSP
181 GVHSGTVFLA LRILLTLLAH PPLLAKFREG TANGGWLTDA DSVVRNRAAV VLGFSVSAHG
241 GSVGSKIDIN PELQNCAGFA ALEHLMAAHA DKPHAYLAML AVLVGQPVKD LRFCEHFNVD
301 QIWTHVFGLA LNSSVYEAIR SAEFCYDALI PLLAMVRACV FSGNEALQGW HVDYPSSVVQ
361 MITFLYQNSP NFFAIAHSEE FVLAMFSALI QDTNAMGAKS ESADRSVAGT PELEKAQGVL
421 SLPSVKAILD FMKKLFCDDF QVAPGGRADS LIDVITESVA ENGYTRKSQI VTLTALIHGI
481 FDHLVSTDLL VSSSLPPNAP PQSLAQVGVN ISYMAHRAVD CLWNGVIIGE PLRLLNLLYS
541 VYSIASRKEN KEINLDSLTS SIMRCVLYIL SRPIDNVQVQ MSVLDALSSV VTKRYIFLSS
601 NESWFFTALT HLIFMLSVTP DIMQQDNAPL EKASAQVAVC ASRVWTDVIS SKKALLEEAF
661 KKPTVCELNA ARALLANVAG QHWHQFVDGQ LSGNYQNHII SKDIQTQISS KITRVASGLH
721 RLASKSRTLS SHGSISSIMP WKNVSVDKEV IHMWLRVHVS LVKELVAAQA TRYHEWHAHA
781 KKWSLHEWHQ LEAELTRERG IWGPEKASVL DKYKLDTTEG PSRTRRKMIP NRFFYHTFPY
841 RPHLDDPAAK SMRAKVAISR DSELYFNACR KRRGRIMDSR IIDYSVAVST PSEEKPAFTF
901 RDLAQINSSL IRRLSAKPSV EIDPTTSIED NGKENDNCDE NGGKEPSVEL EEEQQDESSA
961 SDKPSSENRE EAKEEEKKDI DNRKKRGPDN QTLLRLLEQG EQLHSMFRCA RIQGLETSEG
1021 LLLFGREHYY VVDGFTLLKT REIRDLDFLS SELHDPIVPY TATGATHPPR SSRLCSKFSY
1081 EDIREVHKRR YLLQPIALEV FSADGRNYLL AFPKKMRDRV YEKLLSMAKG LTSGGTDSVG
1141 GQKANMAIEQ SGRASLLNSI IGQQSVTQRW LNGQITNFQY LIHLNTLAGR SYNDLSQYPI
1201 LPWVLADYSS STLDFTNPKT FRDLSKPMGA QHPQRLEQFM KRYREWDDPT GETPPYMYGT
1261 HYSSAMIVVS YLVRLEPFTQ QFLSLQGGHF DLADRMFHSI GDAWTSASRN NMADVKELIP
1321 EFFVLPELLL NKNRFDFGIK QNGVALDDVV LPPWAHGDAR EFIRLHRQAL ECDYVSSHLH
1381 EWIDLVFGYK QNGEEAVKAN NLFHHLFYEG SVDFESIVDP LTRNATIGFV NNFGQIPTQL
1441 FKKPHPQKKV SPVDGFSNTP GVTTQRLFYH CLHSLKPPQC PVKELRSAIG SIYQTERAGL
1501 IALEQNKVLI GTNRYIAWGY PDRSIRMGQI DSDKSCCIHE MCDADELTCV ACGDDRTLFC
1561 GSSTGCVSVW TLCRKPVSLK RRKLLDGHSD AVTCLVVCSA HAFVVSASRD CSVILWHQSE
1621 LYLIRQLPPH PSPVTAVAIN DTTGDIATSC STLLHLWSIN GDLLAVVNTC DSNLIIDPSQ
1681 MILSLTFSTM NEWDTDNVVV CGTSDGVVKI YSCVMVENDG SVEAPHIEPQ TKSNLSSSAS
1741 VHARLDRVRR RLKVSGSQDT SEAHSPEPPT SPVAQGSHSR GADKTACPQY VRVLMQRAAL
1801 TVHTAFNRPD NTHPAPITCL APSRDHKSFL VGDGDGRVWC WQAGEDGGRA DHWVQDVSRQ
1861 RCTQCQHKFS IADRKHHCRN CGQIFCAKCS RFESHITHMK ISRPVRVCQN CFLRLRAQT
//