LOCUS WKY07937.1 2556 aa PRT INV 31-JUL-2023
DEFINITION Nippostrongylus brasiliensis hypothetical protein protein.
ACCESSION CP130735-4763
PROTEIN_ID WKY07937.1
SOURCE Nippostrongylus brasiliensis
ORGANISM Nippostrongylus brasiliensis
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
Rhabditina; Rhabditomorpha; Strongyloidea; Heligmosomidae;
Nippostrongylus.
REFERENCE 1 (bases 1 to 50441521)
AUTHORS Schwarz,E.M., Baniya,A., Rodriguez,I.M., Lu,D., Bobardt,S.D.,
Anesko,K., Baker,L., Gouil,Q., Ritchie,M.E., Jex,A.R., Nair,M.G.
and Dillman,A.R.
TITLE A Nippostrongylus brasiliensis chromosomal reference genome and its
transcriptomics
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 50441521)
AUTHORS Schwarz,E.M., Baniya,A., Rodriguez,I.M., Lu,D., Bobardt,S.D.,
Anesko,K., Baker,L., Gouil,Q., Ritchie,M.E., Jex,A.R., Nair,M.G.
and Dillman,A.R.
TITLE Direct Submission
JOURNAL Submitted (16-JUL-2023) Molecular Biology and Genetics, Cornell
University, Biotechnology Bldg., 526 Campus Road, Ithaca, NY 14853,
USA
COMMENT ##Genome-Assembly-Data-START##
Assembly Date :: 03-JUN-2022
Assembly Method :: raven v. 1.7.0; sourmash v. MAR-2022;
racon v. 1.4.20; POLCA (in MaSuRCA) v.
4.0.8; 3d-dna v. 180419
Assembly Name :: Nippo_1.0
Genome Representation :: Full
Expected Final Version :: Yes
Genome Coverage :: 76.0x
Sequencing Technology :: Oxford Nanopore PromethION; Illumina
HiSeq; Omni-C
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Nippostrongylus brasiliensis"
/mol_type="genomic DNA"
/strain="MIMR"
/db_xref="taxon:27835"
/chromosome="IV"
/sex="pooled male and female"
/tissue_type="Whole animal"
/dev_stage="Adults"
/geo_loc_name="USA: Laboratory of Meera Nair, UC Riverside
School of Medicine, Riverside, CA"
/collection_date="2021/2022"
protein /locus_tag="Q1695_007437"
/note="NIPPO_CHRIV.G11277.T2"
intron_pos 27:0 (1/58)
intron_pos 64:2 (2/58)
intron_pos 94:0 (3/58)
intron_pos 127:2 (4/58)
intron_pos 177:2 (5/58)
intron_pos 223:1 (6/58)
intron_pos 263:0 (7/58)
intron_pos 290:1 (8/58)
intron_pos 342:0 (9/58)
intron_pos 397:0 (10/58)
intron_pos 447:0 (11/58)
intron_pos 477:0 (12/58)
intron_pos 510:0 (13/58)
intron_pos 542:1 (14/58)
intron_pos 609:0 (15/58)
intron_pos 658:0 (16/58)
intron_pos 698:0 (17/58)
intron_pos 755:1 (18/58)
intron_pos 780:0 (19/58)
intron_pos 809:2 (20/58)
intron_pos 849:0 (21/58)
intron_pos 903:2 (22/58)
intron_pos 929:0 (23/58)
intron_pos 962:1 (24/58)
intron_pos 988:0 (25/58)
intron_pos 1042:2 (26/58)
intron_pos 1079:2 (27/58)
intron_pos 1121:0 (28/58)
intron_pos 1148:1 (29/58)
intron_pos 1174:0 (30/58)
intron_pos 1233:0 (31/58)
intron_pos 1287:1 (32/58)
intron_pos 1345:0 (33/58)
intron_pos 1384:0 (34/58)
intron_pos 1426:2 (35/58)
intron_pos 1450:0 (36/58)
intron_pos 1500:0 (37/58)
intron_pos 1561:2 (38/58)
intron_pos 1613:0 (39/58)
intron_pos 1707:0 (40/58)
intron_pos 1725:1 (41/58)
intron_pos 1769:0 (42/58)
intron_pos 1804:2 (43/58)
intron_pos 1854:0 (44/58)
intron_pos 1906:0 (45/58)
intron_pos 1952:0 (46/58)
intron_pos 2019:2 (47/58)
intron_pos 2062:0 (48/58)
intron_pos 2089:0 (49/58)
intron_pos 2157:1 (50/58)
intron_pos 2228:1 (51/58)
intron_pos 2289:0 (52/58)
intron_pos 2325:0 (53/58)
intron_pos 2374:0 (54/58)
intron_pos 2408:0 (55/58)
intron_pos 2456:0 (56/58)
intron_pos 2493:0 (57/58)
intron_pos 2525:0 (58/58)
BEGIN
1 MKNSSASHII DQIKFRLDDG TFDPEKGSFW VLLSSLVLFV LWVVFITFYL SRVAGPVLSF
61 IINRYLRFSK TPGHVKLRSF SLSPLGGKLM FKDFLYANDD YSLRINDGWI VFSYWRFVPG
121 RNVSFKSNSS RLHLSLNGLQ IHLYNQVQRY KEIAKLFRME KLFGDDVDVK KPVPVDTAPP
181 SAYWDRIWSL IGVIKLDIWS GRIVIGNRLL PYMLVVSMEN LRSKIRLRES AADRALLSVE
241 GQAESVRAAF TKHPEYDGKP YKEPPRTMGD GFAILQSALL HFFYHQDILG YVTVDQQSTT
301 TQRPIWESIW RFDHNTVFSY GPWAEQQRVL LYSFFYPPDY QTRTPDELPK RGQRRIHVMH
361 DVRISLLKET SIDLWFMRGD QLESIHSRCQ PGSTVDLSIW WITRPDGFSW SMHTSLLRLE
421 STSSLPYRKL LEAETFSIDA EFHYPRVFNG KQTQDFKFRL TKCCCWLVWD HKRFVSDLIT
481 EFLGDQPSDL ISFVPYTVKF DFDVKDSFEI VLLLNESNWV DPSEKNPENV EAAIVGSHLQ
541 ICFTLPFEDF LPELVSTTYT IRMVNELALR LRYPPGSATA PIIAALSRGA LTNMYSIPSP
601 HGRNSKNADE WHEVWRTESI TCVIGYTYHP IVSKIPSDIP QHVLQEFLPK PVEHPKDLAP
661 DQMNVTVEIG GSEVMITGAL IKCIIELKNN YFGLYDSMTD VTHPEAPEMK KSIYNRVPPN
721 AAVDNYRPMK VVVDMRIFNV RAHCLTYASY SEERGFSPVL CTEEIAVLIN KGFQETIMQV
781 GVGPCAAYFE RASLSHNDGY ITLSGLQFRG HAMFSSVDCP WDMAVVEYCW LTEILIGVVN
841 GCFGSPSQII TLVNFLDTLL LLVVAKDDDK IVPERFKFCQ HGQSSASCSI GAQPGRECDS
901 EERLKYRQMR LSVDGIQLAL ADENTAINLS LDPVRFTLCN AHEKRFAEHI CVRIPAVTAR
961 QLYRPADSST WLECARASIA GVSLDVELPV PSASSSLDQL RQAFLMKHDR ETKRLRFLWN
1021 PNTVWSCACY GDTAFISMDD PLGQFFLTHL SDKLCVPSMN KTPGGQPGFF QNILDPQKKL
1081 FRGEMKQFFT PTRKSSVLSV SEVPSVDTAS FHSAMSKTVP LEKCLLSVRP LTDAYSLYLA
1141 QFNVARTKSE PPQFGAPGEI AQWVEARTFS VYETQTGISS VELNLLAPVK DSPKVEHQSL
1201 SSEMVFEPQA PEVATTSGNK LVINGSCGSR MEVFFTPLAV ETLDRLLNDV SRCISLIHPS
1261 MIVQMCYREC VGKQHRQPLT EPLFSEADSN RMLSISMDLP RVHISMFECS ILPSSSSGHL
1321 RTASNMAVVL LDKASITTGT GTEFTEGSAT ISFHSSVLSA QLLHFTPRLL TDFAGNRVNF
1381 KASVKWEKSP LASRILEMEP RVVVDFQVPD VEVTYELRKS KVKQPSKDQP QTEGLESLAR
1441 KAAYQRRVKL EIGSVNTLVV MPRPLEMTGR NEFPLYDVLS PCLTTWMHVS KKLSDRLLDL
1501 EVSWDETIDM TFAQVLKMAL DCTEERIFNV KPGRCVMSKV KELGVHQASC PSCLLLQTVL
1561 RWCALPTSAE KLAQQPPSSL ASNLEFSDKT KRKTALMALL SHWHPDICKQ VTLASNAEAR
1621 KYRADPTSLQ REVRLSIEGP EKKENAEKKE SAEKKETPAK KDGVEGKEGS EENKGPEKKG
1681 VATKKSESKA EMKRHRTPSS GSRASRNVNA SSIRKRRSSV QDQKVDLYHW LLSVHREPKD
1741 KKMAESHNKN YLNPMEIMPQ AFFFSFYRSR RLNWTNLDEL PIDHLWFTYS VVVNDIVTAM
1801 VEQRVVTSTQ DTSRKFITPH LHQLVHVKKV AVDGKLSWSI EMDDKGLLPV KGIADITYNG
1861 NVENVRFVMA LCSVSLIQEI ALVAKSVGTS GPDTPKKRPS APPSFADNSP SAESQLTANT
1921 RASVTWDVRV LDMMRDFEKN RSRLSSRRRG DVVKKIRGEI EIDSVRLESI LTDLYVSMMI
1981 QLIGIKQHHD SDNGESKSST VVKPTMKHQM VSMLDMSLQQ VAGVSASEPL TSLRVSLGSI
2041 EGELPVAAHS LHDVVMRHGP QLEQQFNRLS AQPTPGNVGT MVQTVSLQEV PMPEVAQMSA
2101 PWLQNQADSK KPTGPRPTVM KLKFEFETSS VELRARLLPS LLARYKLTRI YSSGVTGEQA
2161 KWTASIQNHH AEFCVSSAGK PMDTFTLALP SVVVAGEYTV DKEGTAPASN KALLYREGGY
2221 LKINVTLGQV NHSFSTDLLN QVLFAEQSFR SELSALVTRI RAERTGWAPS ATRSLAVEKE
2281 PLLLFALTVK GQGVPWLQLT AATPTATAVR FTIESLDAEL TNRWVLKELG SAKERLFGAA
2341 AIQFNAKLGQ LVKAAEYEEL RPELQEYATF MTQVRVENKE SSSHQSYSYH IALNRPILLI
2401 KSSAIDKAIL LWLNYKNTYD YWRAERSKLV RAANAASKRN TGIQHAMFSP PAAAQNFDVS
2461 LTLAINNGMY VCMPLYSQDL TDGMPALVLS LQKSDVTVCI MKELACQASF HGFKLNFIDN
2521 FDELSLCESV KEATGNTQTN YIFFPQGTYQ LCSQVR
//