LOCUS WKY07913.1 1168 aa PRT INV 31-JUL-2023
DEFINITION Nippostrongylus brasiliensis hypothetical protein protein.
ACCESSION CP130735-4737
PROTEIN_ID WKY07913.1
SOURCE Nippostrongylus brasiliensis
ORGANISM Nippostrongylus brasiliensis
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
Rhabditina; Rhabditomorpha; Strongyloidea; Heligmosomidae;
Nippostrongylus.
REFERENCE 1 (bases 1 to 50441521)
AUTHORS Schwarz,E.M., Baniya,A., Rodriguez,I.M., Lu,D., Bobardt,S.D.,
Anesko,K., Baker,L., Gouil,Q., Ritchie,M.E., Jex,A.R., Nair,M.G.
and Dillman,A.R.
TITLE A Nippostrongylus brasiliensis chromosomal reference genome and its
transcriptomics
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 50441521)
AUTHORS Schwarz,E.M., Baniya,A., Rodriguez,I.M., Lu,D., Bobardt,S.D.,
Anesko,K., Baker,L., Gouil,Q., Ritchie,M.E., Jex,A.R., Nair,M.G.
and Dillman,A.R.
TITLE Direct Submission
JOURNAL Submitted (16-JUL-2023) Molecular Biology and Genetics, Cornell
University, Biotechnology Bldg., 526 Campus Road, Ithaca, NY 14853,
USA
COMMENT ##Genome-Assembly-Data-START##
Assembly Date :: 03-JUN-2022
Assembly Method :: raven v. 1.7.0; sourmash v. MAR-2022;
racon v. 1.4.20; POLCA (in MaSuRCA) v.
4.0.8; 3d-dna v. 180419
Assembly Name :: Nippo_1.0
Genome Representation :: Full
Expected Final Version :: Yes
Genome Coverage :: 76.0x
Sequencing Technology :: Oxford Nanopore PromethION; Illumina
HiSeq; Omni-C
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Nippostrongylus brasiliensis"
/mol_type="genomic DNA"
/strain="MIMR"
/db_xref="taxon:27835"
/chromosome="IV"
/sex="pooled male and female"
/tissue_type="Whole animal"
/dev_stage="Adults"
/geo_loc_name="USA: Laboratory of Meera Nair, UC Riverside
School of Medicine, Riverside, CA"
/collection_date="2021/2022"
protein /locus_tag="Q1695_007423"
/note="NIPPO_CHRIV.G11263.T2"
intron_pos 16:0 (1/25)
intron_pos 57:0 (2/25)
intron_pos 75:0 (3/25)
intron_pos 93:2 (4/25)
intron_pos 149:2 (5/25)
intron_pos 179:1 (6/25)
intron_pos 210:0 (7/25)
intron_pos 242:0 (8/25)
intron_pos 340:0 (9/25)
intron_pos 372:0 (10/25)
intron_pos 393:0 (11/25)
intron_pos 653:0 (12/25)
intron_pos 698:0 (13/25)
intron_pos 733:2 (14/25)
intron_pos 805:0 (15/25)
intron_pos 838:2 (16/25)
intron_pos 873:0 (17/25)
intron_pos 889:0 (18/25)
intron_pos 920:2 (19/25)
intron_pos 953:0 (20/25)
intron_pos 988:0 (21/25)
intron_pos 1017:2 (22/25)
intron_pos 1061:2 (23/25)
intron_pos 1097:0 (24/25)
intron_pos 1121:0 (25/25)
BEGIN
1 MASIIRDGTG FPHREQNTYH RNGKRGADSD SSSSSASSGI EHMAKRRKYQ NGNYKRQRFD
61 PFVISAYNGA SSLNVDVARV SSVCPPPPPP PKKMSRPRGP RTPPMPPCEE EVPPPPTVPP
121 PIPAIPAAAG YPPQVAVVPP PAYAAPPPMM SFPPFYPPPM FFPGCPPIPP MAMMPQCSSM
181 IAPSIAPASA QVKLTISDFP AQKPLKKEVP INEERRLELE RKIEEQIRKE QERRKQLELQ
241 KEREKREQQQ PLKVPTPPPP PPPPNALSQV VPMDQSPDAS PILEPKQEDS EGCSAVASSV
301 PGSVHSESPS AAHHDTNVAP GDSTAVVRKS ASVSERQAKA SKDSLAYDPI LVDLSNSHCV
361 PAMPSSRKRS EKPREANQKP DKEASVTVED RQCHSPVSKA SRAEETVQEV EAKVFLVKEA
421 AFDQGYISAR RTLSAKVEIT AESTAVTSPP TVPEKAEVLN REKQTTNVAS PVKPYTAGRA
481 DQEGVLRAAT KVHINGTREL NHAPVAQPGK AVNDRESSRS GGQIPKEKTG RSVAGNDTLS
541 SASERRGDEK ADEEKRRRDQ ARASSSSRSN GVESESRILL DRQLSTPEKR PAVSESIVKD
601 PNDTPQKSGS TKLNSVVRAK GRHEEAQSID SRKELESSKI AHASRSLETP TKSASQSSSD
661 RNSQKTPRKP SRPLTDQSAS TSSEGVAPSP SKRDKVKLTS TDSPVRSHPA DGELRSNSST
721 RDDKLQKQSK VKLEKREPCE ADHYAAQPST SFVGCSNGTG NGPDSVSECQ TDVKFVKENG
781 HTNNESKEGK HHDKREKLPR ISNKFRKFVI VDTHPNGGAS ILRTDWNNIR KHFNAEERME
841 FAKQFIRLGL AESNGVPVFV IGVLENAASY LVDVFQYMHD KHPHLPVKIG SLTNKQLVET
901 MTFNTYYKQV METCHHGTFR AGPMHSVSMV GAKQEECGDY FAELLAELEK SPILRPIMPW
961 GEWSALQLDN VTECDDGPIF WVRPGEQLIR TDDVKDERES KRKKSAPAGR GHAHPIRHYE
1021 RRELLFEDRT PCHADHVGDG LERKTTAAVG ILQSIRAANE KPSRRAVKDV VCFHAADFER
1081 IVETLQLDLY EPPMSQCVQW VEEAKLNQLR REGVRYSKFH LHHNDIYFLP RNIIHQFRTI
1141 SACSSIAWHV RLQQYYIEDD TTNVEKAE
//