LOCUS WKY07605.1 1005 aa PRT INV 31-JUL-2023
DEFINITION Nippostrongylus brasiliensis hypothetical protein protein.
ACCESSION CP130735-4429
PROTEIN_ID WKY07605.1
SOURCE Nippostrongylus brasiliensis
ORGANISM Nippostrongylus brasiliensis
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
Rhabditina; Rhabditomorpha; Strongyloidea; Heligmosomidae;
Nippostrongylus.
REFERENCE 1 (bases 1 to 50441521)
AUTHORS Schwarz,E.M., Baniya,A., Rodriguez,I.M., Lu,D., Bobardt,S.D.,
Anesko,K., Baker,L., Gouil,Q., Ritchie,M.E., Jex,A.R., Nair,M.G.
and Dillman,A.R.
TITLE A Nippostrongylus brasiliensis chromosomal reference genome and its
transcriptomics
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 50441521)
AUTHORS Schwarz,E.M., Baniya,A., Rodriguez,I.M., Lu,D., Bobardt,S.D.,
Anesko,K., Baker,L., Gouil,Q., Ritchie,M.E., Jex,A.R., Nair,M.G.
and Dillman,A.R.
TITLE Direct Submission
JOURNAL Submitted (16-JUL-2023) Molecular Biology and Genetics, Cornell
University, Biotechnology Bldg., 526 Campus Road, Ithaca, NY 14853,
USA
COMMENT ##Genome-Assembly-Data-START##
Assembly Date :: 03-JUN-2022
Assembly Method :: raven v. 1.7.0; sourmash v. MAR-2022;
racon v. 1.4.20; POLCA (in MaSuRCA) v.
4.0.8; 3d-dna v. 180419
Assembly Name :: Nippo_1.0
Genome Representation :: Full
Expected Final Version :: Yes
Genome Coverage :: 76.0x
Sequencing Technology :: Oxford Nanopore PromethION; Illumina
HiSeq; Omni-C
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Nippostrongylus brasiliensis"
/mol_type="genomic DNA"
/strain="MIMR"
/db_xref="taxon:27835"
/chromosome="IV"
/sex="pooled male and female"
/tissue_type="Whole animal"
/dev_stage="Adults"
/geo_loc_name="USA: Laboratory of Meera Nair, UC Riverside
School of Medicine, Riverside, CA"
/collection_date="2021/2022"
protein /locus_tag="Q1695_007233"
/note="NIPPO_CHRIV.G11073.T1"
intron_pos 41:2 (1/26)
intron_pos 87:2 (2/26)
intron_pos 147:2 (3/26)
intron_pos 179:0 (4/26)
intron_pos 213:1 (5/26)
intron_pos 255:1 (6/26)
intron_pos 286:1 (7/26)
intron_pos 323:0 (8/26)
intron_pos 368:2 (9/26)
intron_pos 408:0 (10/26)
intron_pos 447:0 (11/26)
intron_pos 491:0 (12/26)
intron_pos 524:0 (13/26)
intron_pos 576:0 (14/26)
intron_pos 606:1 (15/26)
intron_pos 642:1 (16/26)
intron_pos 665:1 (17/26)
intron_pos 707:1 (18/26)
intron_pos 730:1 (19/26)
intron_pos 777:1 (20/26)
intron_pos 800:1 (21/26)
intron_pos 842:1 (22/26)
intron_pos 872:1 (23/26)
intron_pos 920:1 (24/26)
intron_pos 943:1 (25/26)
intron_pos 983:1 (26/26)
BEGIN
1 MLGHCHLLVL LAGFGAGVSA LRSFSIDHAN NQFLKDGQPF RYISGSIHYF RTHPDQWQAR
61 LATVRAAGLN AIETYIPWNF HETYKNQYDF TGMRNFSRFF ELAAQNELVV IVRPGPYICA
121 EWENGGLPYW LLKYPNIKQR SSDAEHVFLR ESLAWWDVLL PMIRPYLWKN NGPVVMVQIE
181 NEYGSYGCDH VYLRALRDNA VKNLGNDTVL FTTDPPEEIE CGAIDDVYAT VDFGERGLLL
241 ADEYFKIQRD ANKRKGGPSV NSEAYPGWYR TWGEGGILEN PSASRVLELT ETLYNANASF
301 NFYMFHGGTN FGFWNGAEKP AGLITSYDYF APMAENGDYN VKYTTIRDFI SGIEGWPNPI
361 KPLPQRPRTF SQSNITMSKI GNWFDYETKT INQSRCVQTV VPKTFEELDQ AMGFVKYSIR
421 LNIGGSVLEG TGVHDFGYVF VNKQFQGRLS PHYSPHEVNQ LKLSLKKNDL LEIYVENQGR
481 RTWETINDYK GMVDAVKLDG AQLTGWTSCA VDVDQLTSAT DTNVPSSFNV GDVFRATFHA
541 TGTGDAFIDM SNWGKGVAWL NRFNLGRYWA SAGPQKYLYI PAPLFTSGSG PNTLVFLELE
601 KFSSDFKTAK CPDLETPREA TVKVVNDVAK LTCNGADTYP TGASELQCKN GKWTPAQFGK
661 CVKMKSCFAS QALFAYTGGS VKFSSNVINR RVKPLTVATI TCSESKEQHK LVCGKNGWTP
721 AWHSVRCKQS SCILPRAPYY GKLQISSGIY GAGGIRWWQN RVANNTVVTV SCKHLNGTKQ
781 AKCVDGQWTP FWPSRECNEA VSKCNVFRAP YGTKVQYSDK LYTFWRVRNN TEAIVSCANG
841 KEKRTLKCVN KWWQPSPYSL RLMKCGAKPP EVTCRMPRIA YAGIMEFSKE IVFNAKGTKF
901 STGSLTNGTV AGITCPGRKG VIKSVCANGE WNPRLTLYEC VLSGCKLRRI PPNVRVTLSD
961 GLLQRNTVAG DTKATVTCAN SKAKLELECK GGKWTPAWHE IYKLC
//