LOCUS WKY07588.1 2606 aa PRT INV 31-JUL-2023
DEFINITION Nippostrongylus brasiliensis hypothetical protein protein.
ACCESSION CP130735-4413
PROTEIN_ID WKY07588.1
SOURCE Nippostrongylus brasiliensis
ORGANISM Nippostrongylus brasiliensis
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
Rhabditina; Rhabditomorpha; Strongyloidea; Heligmosomidae;
Nippostrongylus.
REFERENCE 1 (bases 1 to 50441521)
AUTHORS Schwarz,E.M., Baniya,A., Rodriguez,I.M., Lu,D., Bobardt,S.D.,
Anesko,K., Baker,L., Gouil,Q., Ritchie,M.E., Jex,A.R., Nair,M.G.
and Dillman,A.R.
TITLE A Nippostrongylus brasiliensis chromosomal reference genome and its
transcriptomics
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 50441521)
AUTHORS Schwarz,E.M., Baniya,A., Rodriguez,I.M., Lu,D., Bobardt,S.D.,
Anesko,K., Baker,L., Gouil,Q., Ritchie,M.E., Jex,A.R., Nair,M.G.
and Dillman,A.R.
TITLE Direct Submission
JOURNAL Submitted (16-JUL-2023) Molecular Biology and Genetics, Cornell
University, Biotechnology Bldg., 526 Campus Road, Ithaca, NY 14853,
USA
COMMENT ##Genome-Assembly-Data-START##
Assembly Date :: 03-JUN-2022
Assembly Method :: raven v. 1.7.0; sourmash v. MAR-2022;
racon v. 1.4.20; POLCA (in MaSuRCA) v.
4.0.8; 3d-dna v. 180419
Assembly Name :: Nippo_1.0
Genome Representation :: Full
Expected Final Version :: Yes
Genome Coverage :: 76.0x
Sequencing Technology :: Oxford Nanopore PromethION; Illumina
HiSeq; Omni-C
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Nippostrongylus brasiliensis"
/mol_type="genomic DNA"
/strain="MIMR"
/db_xref="taxon:27835"
/chromosome="IV"
/sex="pooled male and female"
/tissue_type="Whole animal"
/dev_stage="Adults"
/geo_loc_name="USA: Laboratory of Meera Nair, UC Riverside
School of Medicine, Riverside, CA"
/collection_date="2021/2022"
protein /locus_tag="Q1695_007222"
/note="NIPPO_CHRIV.G11062.T4"
intron_pos 25:0 (1/62)
intron_pos 73:0 (2/62)
intron_pos 120:1 (3/62)
intron_pos 161:0 (4/62)
intron_pos 202:0 (5/62)
intron_pos 276:2 (6/62)
intron_pos 323:0 (7/62)
intron_pos 364:0 (8/62)
intron_pos 396:0 (9/62)
intron_pos 419:0 (10/62)
intron_pos 469:1 (11/62)
intron_pos 513:0 (12/62)
intron_pos 551:1 (13/62)
intron_pos 594:0 (14/62)
intron_pos 632:0 (15/62)
intron_pos 652:2 (16/62)
intron_pos 693:0 (17/62)
intron_pos 734:1 (18/62)
intron_pos 763:2 (19/62)
intron_pos 832:0 (20/62)
intron_pos 892:1 (21/62)
intron_pos 949:0 (22/62)
intron_pos 978:0 (23/62)
intron_pos 1031:0 (24/62)
intron_pos 1097:2 (25/62)
intron_pos 1125:2 (26/62)
intron_pos 1161:1 (27/62)
intron_pos 1187:0 (28/62)
intron_pos 1218:2 (29/62)
intron_pos 1227:2 (30/62)
intron_pos 1264:0 (31/62)
intron_pos 1301:1 (32/62)
intron_pos 1356:0 (33/62)
intron_pos 1375:0 (34/62)
intron_pos 1406:2 (35/62)
intron_pos 1453:1 (36/62)
intron_pos 1542:1 (37/62)
intron_pos 1569:1 (38/62)
intron_pos 1614:2 (39/62)
intron_pos 1654:2 (40/62)
intron_pos 1694:2 (41/62)
intron_pos 1737:2 (42/62)
intron_pos 1770:1 (43/62)
intron_pos 1827:0 (44/62)
intron_pos 1844:0 (45/62)
intron_pos 1890:0 (46/62)
intron_pos 1925:0 (47/62)
intron_pos 1962:0 (48/62)
intron_pos 2009:0 (49/62)
intron_pos 2053:0 (50/62)
intron_pos 2089:0 (51/62)
intron_pos 2121:2 (52/62)
intron_pos 2183:0 (53/62)
intron_pos 2230:0 (54/62)
intron_pos 2269:2 (55/62)
intron_pos 2307:0 (56/62)
intron_pos 2356:1 (57/62)
intron_pos 2409:2 (58/62)
intron_pos 2458:0 (59/62)
intron_pos 2484:0 (60/62)
intron_pos 2547:1 (61/62)
intron_pos 2572:0 (62/62)
BEGIN
1 MDGIDPDVLL EWLQTGIGDE RDLQMMALEQ LCMLLLMSDN IDRCFESCPP RTFLPALCKI
61 FLDETATEAV LEVTARAITY YLDVSNECTR RIIQVDGAVK AICSRLAAAE MTDRTSKDLA
121 EQCVKLLEHI CQRETLAVYD AGGMHAMLTL VRVHGSQVHK DTMHSAMSVV TRLCGKMEPN
181 DAALPQCAES LGALLAHEDN KVSESALRCF AALTDRFIRK MLDPAELATH SNLVEHLLTT
241 LSSETAAHSA NFISIVLSLL SNLCRGSAAV TEQVLSSPRL ISALQCVLTN KDDRCVTDGL
301 RLADLLVVLL SEGRSALPFT MAYQSSGEPG QSGQSAERAH RHLIDAIRQK DLSALVDTID
361 NGVVDVNFTD DVGQTLCNWA SAFGSLEMVQ YLCDKGADVN KGHKSSSLHY AASFGRPDIV
421 KVLLQRGANP DLRDEDGKTA LDKARERTDE DHTQVAQILE SPSVYMHSKS DEQNKSKQAS
481 VVRKSSTTDL PDRELAIRVL HQLLPIFCEI FMKSLSASVR RTSLSLLRKI VEHMQLDDLR
541 TPQSQAIESQ GCSSDIEATA STDLPPGAEN LVSVVVSVLE QEEDHDGQEQ VLLILSSLLR
601 KDPELWVPEL VRLGVFERVE AMAKEPPRSS DDDDDDADRA EELNARNSAM SRSTTSTPSV
661 AMELDVVERS LSTGYGEDAE KERAAMLNVM MEDITTTETP PPTVEVVQSN AGSSLTLMVP
721 SSSSDKGKLV LQQDVPYRWK EWRVIRGEES TFIWCDVLAL EMSFNSNGWF RFFMDGEVTT
781 MFNNGVAESV SDEVRAETKK SFMTRWRRVK QMWNDDTLPV SILCVPCMGK KVEFPRWEMW
841 SSRSTELTIK CTKTEEQIVV KDELGGFVVE SSDKTKHSQM PETALSSEFH TGWSSHGMTA
901 RRSKFRGEIQ RRKVQELAWE LWNNHLKEAR AKPREALIEL QKAAICIQDA VTTANLIAGI
961 SIKSKHVKQP RIEKVQELVS ALKCVRESVL DDRRLSTFEF SVSGIVPALH NLLALVERQP
1021 GSYPARIFGE TFAHGVALSS LAMKMVSVLE STEKFPQYLY DTPGGSAFGL QLLSRRIRMK
1081 LEHAISEHDD KKQLINRSGR LLKSEPLTTV GQLKSFLLKM VAKQWFDRER ANLGFVKAIE
1141 ESKKSGERIR LTYTSDFDEQ GVIYWLGTNG RTTADWTNPA SIGIVQVTSS DQRQPFGKPE
1201 DVLSRDLNPI NCHSSDDNHS AVCLPMKNAN FTIDLGVFLY PTAYTLRHAR GYGRSALRNW
1261 LLQGSKDKQV WEVLVAHSDD ISLGDPGSTA TWPIEDDRTK GPFRYLRIAQ NGKNSSGQTC
1321 YLSISGFEVY GEIVDVVTDG FPVQKDDKER SGCSLGKSKI PLPSSSRKDS NRDDKVELLM
1381 PQGANNNKLR AGLTADMVSM MHTRSRMRVA RAGRHAAVGT DARGMRVIRG PDWSWDDQDG
1441 GGEGKIIGCV ENGWVDVMWD NGYTNSYRFG ADGRFDIQRV SGRTSLTTST PAISVLEAVR
1501 AKGRGLMGRS RETGSVRDGS SSPFSSFTGF TAFATKQRRA GVSTPLSRFA KVPSTSTSGA
1561 TTSSSSNIGK KSMSTTNLVE DRTKAGPSVA STGQAASAES LQHQTQSLEN LLARANPHRF
1621 TRIAETMESG AETPEPGHET PVAAEAEESD SATSAAGSHA ALSVCSSQSS VVDATPRDGA
1681 TPPAPQVDPS KMSSLSVSAP DLAAARQRQQ SSDTFEMDKT VEEDEEQEGE DEEEEESNEK
1741 VNFADMMVDA LQTSSERSLF EKLREVFGTE DSLEHLITSS SSTEPGEVTA PSTSTSVSQK
1801 NIKKDKTSLK QKLGNYADVL KGIMQTMMDP SGNSIEVEEL LDEDDYYDDE EGNEEDIEDD
1861 LNALGVPVDS LATVLTGRGG ESFKLNWKQL MSGGLDSRNR DQRGSNKSNF RSWDDELVLK
1921 CSFQALIPAF DPRPGRTNVN QTQDVELPTV VPDPAQTKPV SAEETSLRLF LRGPNMNGIE
1981 NVTIEMGADD HSLFYYVQAL VGAIDWGAKC ERSRRVWEPT YTLIYEDASQ PYATKFSQIA
2041 SDDSKVPVAV NECLEVIGLL SRIGERFPDA QISPQVFISD KLTLKLTQEL SDALVVAARA
2101 MPDWCSRLIY GYPCLFSAET KNMYMQATAF GVSRTIVWLQ SRRDAALDRA RGAAQSTTSS
2161 ATRPHDRYQE YRVGRLKHER IKVTRSEEHL LEQAVRVMKF HADRKAVLEI EYVGEEGTGL
2221 GPTLEFYALV AAELQRKALA IWLCDDMDEH QLKMEERELD LGEGKKPPGF YVRRAGGLFP
2281 APLPPHTDEV RRASEMFRVL GIFLAKVLQD GRLVDLPLAR PFLKLIVSPH LSEAEEPSLD
2341 RVLSLDDFEE VHPVKGGFLK ELRALAQRKR AIENEPMLDR EAKRRKIDEL KLCIHGTRCR
2401 VEDLALNFTV NPPSSVFDYE EMELVEGGAD MDVTMDNVEL YVQKCADFYL NTGIINQMRA
2461 FRDGFDRVFG LRALRSYSPE EVQRLLSGEQ CPEWTREDVL NYTEPKLGYT KDSPGFLRFV
2521 DVMVELNPHE RKNFLQFATG CSSLPPGGLA NLHPRLTVVR KVESGDGSYP SVNTCVHYLK
2581 LPEYSSSEIL RERLLTAVNE KGFHLN
//