LOCUS WKY07585.1 2600 aa PRT INV 31-JUL-2023
DEFINITION Nippostrongylus brasiliensis hypothetical protein protein.
ACCESSION CP130735-4412
PROTEIN_ID WKY07585.1
SOURCE Nippostrongylus brasiliensis
ORGANISM Nippostrongylus brasiliensis
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
Rhabditina; Rhabditomorpha; Strongyloidea; Heligmosomidae;
Nippostrongylus.
REFERENCE 1 (bases 1 to 50441521)
AUTHORS Schwarz,E.M., Baniya,A., Rodriguez,I.M., Lu,D., Bobardt,S.D.,
Anesko,K., Baker,L., Gouil,Q., Ritchie,M.E., Jex,A.R., Nair,M.G.
and Dillman,A.R.
TITLE A Nippostrongylus brasiliensis chromosomal reference genome and its
transcriptomics
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 50441521)
AUTHORS Schwarz,E.M., Baniya,A., Rodriguez,I.M., Lu,D., Bobardt,S.D.,
Anesko,K., Baker,L., Gouil,Q., Ritchie,M.E., Jex,A.R., Nair,M.G.
and Dillman,A.R.
TITLE Direct Submission
JOURNAL Submitted (16-JUL-2023) Molecular Biology and Genetics, Cornell
University, Biotechnology Bldg., 526 Campus Road, Ithaca, NY 14853,
USA
COMMENT ##Genome-Assembly-Data-START##
Assembly Date :: 03-JUN-2022
Assembly Method :: raven v. 1.7.0; sourmash v. MAR-2022;
racon v. 1.4.20; POLCA (in MaSuRCA) v.
4.0.8; 3d-dna v. 180419
Assembly Name :: Nippo_1.0
Genome Representation :: Full
Expected Final Version :: Yes
Genome Coverage :: 76.0x
Sequencing Technology :: Oxford Nanopore PromethION; Illumina
HiSeq; Omni-C
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Nippostrongylus brasiliensis"
/mol_type="genomic DNA"
/strain="MIMR"
/db_xref="taxon:27835"
/chromosome="IV"
/sex="pooled male and female"
/tissue_type="Whole animal"
/dev_stage="Adults"
/geo_loc_name="USA: Laboratory of Meera Nair, UC Riverside
School of Medicine, Riverside, CA"
/collection_date="2021/2022"
protein /locus_tag="Q1695_007222"
/note="NIPPO_CHRIV.G11062.T1"
intron_pos 25:0 (1/61)
intron_pos 73:0 (2/61)
intron_pos 120:1 (3/61)
intron_pos 161:0 (4/61)
intron_pos 202:0 (5/61)
intron_pos 276:2 (6/61)
intron_pos 323:0 (7/61)
intron_pos 364:0 (8/61)
intron_pos 396:0 (9/61)
intron_pos 419:0 (10/61)
intron_pos 469:1 (11/61)
intron_pos 513:0 (12/61)
intron_pos 551:1 (13/61)
intron_pos 594:0 (14/61)
intron_pos 632:0 (15/61)
intron_pos 652:2 (16/61)
intron_pos 693:0 (17/61)
intron_pos 734:1 (18/61)
intron_pos 763:2 (19/61)
intron_pos 832:0 (20/61)
intron_pos 892:1 (21/61)
intron_pos 949:0 (22/61)
intron_pos 978:0 (23/61)
intron_pos 1031:0 (24/61)
intron_pos 1097:2 (25/61)
intron_pos 1125:2 (26/61)
intron_pos 1161:1 (27/61)
intron_pos 1187:0 (28/61)
intron_pos 1218:2 (29/61)
intron_pos 1255:0 (30/61)
intron_pos 1292:1 (31/61)
intron_pos 1347:0 (32/61)
intron_pos 1366:0 (33/61)
intron_pos 1397:2 (34/61)
intron_pos 1444:1 (35/61)
intron_pos 1533:1 (36/61)
intron_pos 1560:1 (37/61)
intron_pos 1605:2 (38/61)
intron_pos 1645:2 (39/61)
intron_pos 1685:2 (40/61)
intron_pos 1728:2 (41/61)
intron_pos 1761:1 (42/61)
intron_pos 1818:0 (43/61)
intron_pos 1835:0 (44/61)
intron_pos 1881:0 (45/61)
intron_pos 1919:0 (46/61)
intron_pos 1956:0 (47/61)
intron_pos 2003:0 (48/61)
intron_pos 2047:0 (49/61)
intron_pos 2083:0 (50/61)
intron_pos 2115:2 (51/61)
intron_pos 2177:0 (52/61)
intron_pos 2224:0 (53/61)
intron_pos 2263:2 (54/61)
intron_pos 2301:0 (55/61)
intron_pos 2350:1 (56/61)
intron_pos 2403:2 (57/61)
intron_pos 2452:0 (58/61)
intron_pos 2478:0 (59/61)
intron_pos 2541:1 (60/61)
intron_pos 2566:0 (61/61)
BEGIN
1 MDGIDPDVLL EWLQTGIGDE RDLQMMALEQ LCMLLLMSDN IDRCFESCPP RTFLPALCKI
61 FLDETATEAV LEVTARAITY YLDVSNECTR RIIQVDGAVK AICSRLAAAE MTDRTSKDLA
121 EQCVKLLEHI CQRETLAVYD AGGMHAMLTL VRVHGSQVHK DTMHSAMSVV TRLCGKMEPN
181 DAALPQCAES LGALLAHEDN KVSESALRCF AALTDRFIRK MLDPAELATH SNLVEHLLTT
241 LSSETAAHSA NFISIVLSLL SNLCRGSAAV TEQVLSSPRL ISALQCVLTN KDDRCVTDGL
301 RLADLLVVLL SEGRSALPFT MAYQSSGEPG QSGQSAERAH RHLIDAIRQK DLSALVDTID
361 NGVVDVNFTD DVGQTLCNWA SAFGSLEMVQ YLCDKGADVN KGHKSSSLHY AASFGRPDIV
421 KVLLQRGANP DLRDEDGKTA LDKARERTDE DHTQVAQILE SPSVYMHSKS DEQNKSKQAS
481 VVRKSSTTDL PDRELAIRVL HQLLPIFCEI FMKSLSASVR RTSLSLLRKI VEHMQLDDLR
541 TPQSQAIESQ GCSSDIEATA STDLPPGAEN LVSVVVSVLE QEEDHDGQEQ VLLILSSLLR
601 KDPELWVPEL VRLGVFERVE AMAKEPPRSS DDDDDDADRA EELNARNSAM SRSTTSTPSV
661 AMELDVVERS LSTGYGEDAE KERAAMLNVM MEDITTTETP PPTVEVVQSN AGSSLTLMVP
721 SSSSDKGKLV LQQDVPYRWK EWRVIRGEES TFIWCDVLAL EMSFNSNGWF RFFMDGEVTT
781 MFNNGVAESV SDEVRAETKK SFMTRWRRVK QMWNDDTLPV SILCVPCMGK KVEFPRWEMW
841 SSRSTELTIK CTKTEEQIVV KDELGGFVVE SSDKTKHSQM PETALSSEFH TGWSSHGMTA
901 RRSKFRGEIQ RRKVQELAWE LWNNHLKEAR AKPREALIEL QKAAICIQDA VTTANLIAGI
961 SIKSKHVKQP RIEKVQELVS ALKCVRESVL DDRRLSTFEF SVSGIVPALH NLLALVERQP
1021 GSYPARIFGE TFAHGVALSS LAMKMVSVLE STEKFPQYLY DTPGGSAFGL QLLSRRIRMK
1081 LEHAISEHDD KKQLINRSGR LLKSEPLTTV GQLKSFLLKM VAKQWFDRER ANLGFVKAIE
1141 ESKKSGERIR LTYTSDFDEQ GVIYWLGTNG RTTADWTNPA SIGIVQVTSS DQRQPFGKPE
1201 DVLSRDLNPI NCHSSDDKNA NFTIDLGVFL YPTAYTLRHA RGYGRSALRN WLLQGSKDKQ
1261 VWEVLVAHSD DISLGDPGST ATWPIEDDRT KGPFRYLRIA QNGKNSSGQT CYLSISGFEV
1321 YGEIVDVVTD GFPVQKDDKE RSGCSLGKSK IPLPSSSRKD SNRDDKVELL MPQGANNNKL
1381 RAGLTADMVS MMHTRSRMRV ARAGRHAAVG TDARGMRVIR GPDWSWDDQD GGGEGKIIGC
1441 VENGWVDVMW DNGYTNSYRF GADGRFDIQR VSGRTSLTTS TPAISVLEAV RAKGRGLMGR
1501 SRETGSVRDG SSSPFSSFTG FTAFATKQRR AGVSTPLSRF AKVPSTSTSG ATTSSSSNIG
1561 KKSMSTTNLV EDRTKAGPSV ASTGQAASAE SLQHQTQSLE NLLARANPHR FTRIAETMES
1621 GAETPEPGHE TPVAAEAEES DSATSAAGSH AALSVCSSQS SVVDATPRDG ATPPAPQVDP
1681 SKMSSLSVSA PDLAAARQRQ QSSDTFEMDK TVEEDEEQEG EDEEEEESNE KVNFADMMVD
1741 ALQTSSERSL FEKLREVFGT EDSLEHLITS SSSTEPGEVT APSTSTSVSQ KNIKKDKTSL
1801 KQKLGNYADV LKGIMQTMMD PSGNSIEVEE LLDEDDYYDD EEGNEEDIED DLNALGVPVD
1861 SLATVLTGRG GESFKLNWKQ FSQLMSGGLD SRNRDQRGSN KSNFRSWDDE LVLKCSFQAL
1921 IPAFDPRPGR TNVNQTQDVE LPTVVPDPAQ TKPVSAEETS LRLFLRGPNM NGIENVTIEM
1981 GADDHSLFYY VQALVGAIDW GAKCERSRRV WEPTYTLIYE DASQPYATKF SQIASDDSKV
2041 PVAVNECLEV IGLLSRIGER FPDAQISPQV FISDKLTLKL TQELSDALVV AARAMPDWCS
2101 RLIYGYPCLF SAETKNMYMQ ATAFGVSRTI VWLQSRRDAA LDRARGAAQS TTSSATRPHD
2161 RYQEYRVGRL KHERIKVTRS EEHLLEQAVR VMKFHADRKA VLEIEYVGEE GTGLGPTLEF
2221 YALVAAELQR KALAIWLCDD MDEHQLKMEE RELDLGEGKK PPGFYVRRAG GLFPAPLPPH
2281 TDEVRRASEM FRVLGIFLAK VLQDGRLVDL PLARPFLKLI VSPHLSEAEE PSLDRVLSLD
2341 DFEEVHPVKG GFLKELRALA QRKRAIENEP MLDREAKRRK IDELKLCIHG TRCRVEDLAL
2401 NFTVNPPSSV FDYEEMELVE GGADMDVTMD NVELYVQKCA DFYLNTGIIN QMRAFRDGFD
2461 RVFGLRALRS YSPEEVQRLL SGEQCPEWTR EDVLNYTEPK LGYTKDSPGF LRFVDVMVEL
2521 NPHERKNFLQ FATGCSSLPP GGLANLHPRL TVVRKVESGD GSYPSVNTCV HYLKLPEYSS
2581 SEILRERLLT AVNEKGFHLN
//