LOCUS WKY07557.1 1215 aa PRT INV 31-JUL-2023
DEFINITION Nippostrongylus brasiliensis hypothetical protein protein.
ACCESSION CP130735-4383
PROTEIN_ID WKY07557.1
SOURCE Nippostrongylus brasiliensis
ORGANISM Nippostrongylus brasiliensis
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
Rhabditina; Rhabditomorpha; Strongyloidea; Heligmosomidae;
Nippostrongylus.
REFERENCE 1 (bases 1 to 50441521)
AUTHORS Schwarz,E.M., Baniya,A., Rodriguez,I.M., Lu,D., Bobardt,S.D.,
Anesko,K., Baker,L., Gouil,Q., Ritchie,M.E., Jex,A.R., Nair,M.G.
and Dillman,A.R.
TITLE A Nippostrongylus brasiliensis chromosomal reference genome and its
transcriptomics
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 50441521)
AUTHORS Schwarz,E.M., Baniya,A., Rodriguez,I.M., Lu,D., Bobardt,S.D.,
Anesko,K., Baker,L., Gouil,Q., Ritchie,M.E., Jex,A.R., Nair,M.G.
and Dillman,A.R.
TITLE Direct Submission
JOURNAL Submitted (16-JUL-2023) Molecular Biology and Genetics, Cornell
University, Biotechnology Bldg., 526 Campus Road, Ithaca, NY 14853,
USA
COMMENT ##Genome-Assembly-Data-START##
Assembly Date :: 03-JUN-2022
Assembly Method :: raven v. 1.7.0; sourmash v. MAR-2022;
racon v. 1.4.20; POLCA (in MaSuRCA) v.
4.0.8; 3d-dna v. 180419
Assembly Name :: Nippo_1.0
Genome Representation :: Full
Expected Final Version :: Yes
Genome Coverage :: 76.0x
Sequencing Technology :: Oxford Nanopore PromethION; Illumina
HiSeq; Omni-C
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Nippostrongylus brasiliensis"
/mol_type="genomic DNA"
/strain="MIMR"
/db_xref="taxon:27835"
/chromosome="IV"
/sex="pooled male and female"
/tissue_type="Whole animal"
/dev_stage="Adults"
/geo_loc_name="USA: Laboratory of Meera Nair, UC Riverside
School of Medicine, Riverside, CA"
/collection_date="2021/2022"
protein /locus_tag="Q1695_007208"
/note="NIPPO_CHRIV.G11048.T2"
intron_pos 23:2 (1/32)
intron_pos 37:0 (2/32)
intron_pos 70:0 (3/32)
intron_pos 85:1 (4/32)
intron_pos 115:0 (5/32)
intron_pos 159:2 (6/32)
intron_pos 217:0 (7/32)
intron_pos 258:2 (8/32)
intron_pos 316:0 (9/32)
intron_pos 354:0 (10/32)
intron_pos 394:0 (11/32)
intron_pos 433:0 (12/32)
intron_pos 469:0 (13/32)
intron_pos 501:0 (14/32)
intron_pos 558:0 (15/32)
intron_pos 588:0 (16/32)
intron_pos 602:1 (17/32)
intron_pos 628:0 (18/32)
intron_pos 661:1 (19/32)
intron_pos 713:0 (20/32)
intron_pos 749:0 (21/32)
intron_pos 803:0 (22/32)
intron_pos 837:1 (23/32)
intron_pos 853:0 (24/32)
intron_pos 896:0 (25/32)
intron_pos 933:2 (26/32)
intron_pos 982:1 (27/32)
intron_pos 996:0 (28/32)
intron_pos 1031:0 (29/32)
intron_pos 1100:0 (30/32)
intron_pos 1149:0 (31/32)
intron_pos 1191:1 (32/32)
BEGIN
1 MWSAVKAKWN RGSTDEKQIM VPRKEDTPPS ASIVQLFRYT SSTDKFLILL GGCVAMATGI
61 GLPMMSIIMG NVSQNFMDIT GNATTVKKFE HDMIQNCLKY VYLGCGIFLA ALIQATCFLT
121 VCENLVNRLR REFFKAILRQ DITWFDKNHS GTLATKLFDN LERVKEGTGD KLGLMIQFVA
181 QFFGGFIVAF TYDWKLTLIM MSLAPFMIIC GAFIAKLMAT ASSQEAKKYA VAGGIAEEVL
241 TSMRTVIAFN GQPHECERYD QALMEGRSTG IKKSLYIGLG LALTFMIMFS SYCLAFWVGT
301 DFVFKNEMQG GTVMTVFFSV MMGSMALGQA GPQFAVLGTA MGAAGALYQI IDREPEIDAY
361 STEGEKPKDL KGKISVSNLK FTYPTRPDVQ VLKGVSFEAN PGETVALVGS SGCGKSTIIQ
421 LLLRYYNPEN GKICIDGKEI DKINLEFLRN YVGVVSQEPV LFNTTIEQNI RYGREDVTDG
481 EITAALRKAN AYDFVQSFPK GIYTNVGDRG TQMSGGQKQR IAIARALVRD PKVLLLDEAT
541 SALDAESEHV VQQALDNASK GRTTIVVAHR LSTIRNADKI IAMKNGEVIE VGTHEELMQK
601 KEPGKAGRRH SVLSQHSRSS VKSPDLKRLN SQLSRTDETA QPVAAVNPKE AEKDLERLKK
661 ELEEEGAVRA NLFKILKYAK PEWAYLVLAV ISSIIQGCVF PAFSLFFTQI IEVFSHPPGD
721 PQLKTDGHFW ALMFLVLGGV EAVTMIVQCF FFGMSAERLT MRLRSMIFHN VMRMDATYFD
781 MPRHSAGKIT TRLATDAPNV KSALDYRLGS VFNCVVSISC GIGIAFYYGW QMALLAGGRA
841 TADAKEMENS GKVAMEAIEG IRTVQALTLE RRLYNMFCSF LDRPHKTNKR KAIMQGISYG
901 FASSIFYFLY ASAFRFGVWL IINQTLQPMN VLKVLFSISF TAGSLGFASA YFPEYIKATF
961 AAGLIFNMLQ EEPHIDGMTD KERPDVPILR GLDIKVNPGE TLALVGPSGC GKSTVISLLE
1021 RLYDPLDGVV AVDGNDLREV NPFHLRSHIA LVSQEPILFD TSIRENIVYG LKEGSISDAQ
1081 IHEVAQRANI HKFISELPEG YNTRAGEKGT QLSGGQKQRI AIARALIRNP KILLLDEATS
1141 ALDTESEKLV QEALDKASEG RTCIVVAHRL STVVNANCIV VVKGGQVVEK GTHQELMQAK
1201 GVYWMLTQKQ TVVKT
//