LOCUS WKY07314.1 1237 aa PRT INV 31-JUL-2023
DEFINITION Nippostrongylus brasiliensis hypothetical protein protein.
ACCESSION CP130735-4139
PROTEIN_ID WKY07314.1
SOURCE Nippostrongylus brasiliensis
ORGANISM Nippostrongylus brasiliensis
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
Rhabditina; Rhabditomorpha; Strongyloidea; Heligmosomidae;
Nippostrongylus.
REFERENCE 1 (bases 1 to 50441521)
AUTHORS Schwarz,E.M., Baniya,A., Rodriguez,I.M., Lu,D., Bobardt,S.D.,
Anesko,K., Baker,L., Gouil,Q., Ritchie,M.E., Jex,A.R., Nair,M.G.
and Dillman,A.R.
TITLE A Nippostrongylus brasiliensis chromosomal reference genome and its
transcriptomics
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 50441521)
AUTHORS Schwarz,E.M., Baniya,A., Rodriguez,I.M., Lu,D., Bobardt,S.D.,
Anesko,K., Baker,L., Gouil,Q., Ritchie,M.E., Jex,A.R., Nair,M.G.
and Dillman,A.R.
TITLE Direct Submission
JOURNAL Submitted (16-JUL-2023) Molecular Biology and Genetics, Cornell
University, Biotechnology Bldg., 526 Campus Road, Ithaca, NY 14853,
USA
COMMENT ##Genome-Assembly-Data-START##
Assembly Date :: 03-JUN-2022
Assembly Method :: raven v. 1.7.0; sourmash v. MAR-2022;
racon v. 1.4.20; POLCA (in MaSuRCA) v.
4.0.8; 3d-dna v. 180419
Assembly Name :: Nippo_1.0
Genome Representation :: Full
Expected Final Version :: Yes
Genome Coverage :: 76.0x
Sequencing Technology :: Oxford Nanopore PromethION; Illumina
HiSeq; Omni-C
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Nippostrongylus brasiliensis"
/mol_type="genomic DNA"
/strain="MIMR"
/db_xref="taxon:27835"
/chromosome="IV"
/sex="pooled male and female"
/tissue_type="Whole animal"
/dev_stage="Adults"
/geo_loc_name="USA: Laboratory of Meera Nair, UC Riverside
School of Medicine, Riverside, CA"
/collection_date="2021/2022"
protein /locus_tag="Q1695_007058"
/note="NIPPO_CHRIV.G10898.T1"
intron_pos 39:2 (1/28)
intron_pos 93:1 (2/28)
intron_pos 126:2 (3/28)
intron_pos 162:2 (4/28)
intron_pos 190:0 (5/28)
intron_pos 231:0 (6/28)
intron_pos 308:0 (7/28)
intron_pos 361:0 (8/28)
intron_pos 403:2 (9/28)
intron_pos 441:0 (10/28)
intron_pos 497:1 (11/28)
intron_pos 533:0 (12/28)
intron_pos 568:2 (13/28)
intron_pos 606:0 (14/28)
intron_pos 648:0 (15/28)
intron_pos 673:0 (16/28)
intron_pos 733:0 (17/28)
intron_pos 773:0 (18/28)
intron_pos 822:2 (19/28)
intron_pos 856:0 (20/28)
intron_pos 878:2 (21/28)
intron_pos 935:0 (22/28)
intron_pos 963:1 (23/28)
intron_pos 1045:2 (24/28)
intron_pos 1109:0 (25/28)
intron_pos 1145:0 (26/28)
intron_pos 1190:0 (27/28)
intron_pos 1213:0 (28/28)
BEGIN
1 MPLAELTNLI VTPAKKLFSD ISNMVNSPDV VAKKIESEEI ESGKQKFSAR HIPEDFCHTY
61 EQAMQQENDR LIELREKIEK PVIQELCNRI HHSTYTLDDL VESIESYLED FYIKGENVEF
121 TPGKDRTVIA KILGVEKKGG AVFYTLFYDD KEIGRICGRD LKRRYEITED DIRSLILLVG
181 SQQPGKPWQV EEVYKKEYGV KDKLAPIFCG GSAQRKSNKI VNTTGRTPVQ NDGDSDSDAP
241 LSHFVNPSRS DVALPPNASA KALEKERKKQ EKKELKEKEK RERKEMAKKE KEKKKAEKKE
301 AKENDSWTLN KFISSPSANG EKKANGSTNT PFLTPQKRSE KRFNAAVSKL QEAWRKRDEQ
361 EFINAAAWGA KILSGAQIDK IPHECHQFAV RKAYLKVKDA EALKKLRTKE ERRAFREKRQ
421 EERQRHQKIM LAKIKAYFSQ EIIEEDLVAC ENALPCPGRL VSVPDGQSLL FTDCIVFTQF
481 FSTLKNFIEA DHKISSRQLF DAVHEGRPGF MRCTWRLFGS LLKTLLLDPE YKKLSHFNAR
541 LHEFSMENNT VSELCRALLI GDSEPIDEKL NAAVDNDEEN GGDAGDTESG RGSPCELNDM
601 SQIDIDVCKT FLDNFTADKE LWELCPEDQL GILGLLLNRI LDLKTFKEYI GQEGLTRTAQ
661 SLREKVKKLQ EQSNSWLEEL AALPEFEEVS DPSLLSRTAT RERAEVQKQR DALERKIEEN
721 KVKLEELFGK LALEKMAKAR SKRVEPIGQD RHFRRYYWFH GNSADDGIWI QDMGITSYEK
781 FIRECIKSGK PFEAEDEESV KIESDDAEKQ PADDWPVLEP ESCTETWYRL AEEESLEGLL
841 TSLVKSGVRE GKLLAFLKKN KDVILQSITR GSARQSKSPD PVDEAEDEDL CSESMTPLKK
901 SVIQLASDLR DSYLTSIGGD FDAELLCCST LEEVKEKLRD LADSITPSAI VRKLEMKVAF
961 QTGQYSHLII ERWRQRLAEC QNASAVHLLR SYLDSRIDWK QSVVEKRCNS CGSRRSPEAK
1021 IACANCATVL HYYCARPRLE EKPTSWLCTI CQRAEQKKKQ EEEMAQHPPC TKTGRKVVNY
1081 VDKTGSSSES GEEDSDEGEN DCDFFGVKHP RRSFRKRAMR DFFEDDVEDK RSRAKRSKVN
1141 PASEECIELL GRVKAYHRLY RTLQNIPAIR SSRRATPSTI DALEGAIHEY STLSSFAADL
1201 DNFFKHARSY LEEHNERKLE ELENLLIELD LRSFMKP
//