LOCUS WKY07202.1 1183 aa PRT INV 31-JUL-2023
DEFINITION Nippostrongylus brasiliensis hypothetical protein protein.
ACCESSION CP130735-4027
PROTEIN_ID WKY07202.1
SOURCE Nippostrongylus brasiliensis
ORGANISM Nippostrongylus brasiliensis
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
Rhabditina; Rhabditomorpha; Strongyloidea; Heligmosomidae;
Nippostrongylus.
REFERENCE 1 (bases 1 to 50441521)
AUTHORS Schwarz,E.M., Baniya,A., Rodriguez,I.M., Lu,D., Bobardt,S.D.,
Anesko,K., Baker,L., Gouil,Q., Ritchie,M.E., Jex,A.R., Nair,M.G.
and Dillman,A.R.
TITLE A Nippostrongylus brasiliensis chromosomal reference genome and its
transcriptomics
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 50441521)
AUTHORS Schwarz,E.M., Baniya,A., Rodriguez,I.M., Lu,D., Bobardt,S.D.,
Anesko,K., Baker,L., Gouil,Q., Ritchie,M.E., Jex,A.R., Nair,M.G.
and Dillman,A.R.
TITLE Direct Submission
JOURNAL Submitted (16-JUL-2023) Molecular Biology and Genetics, Cornell
University, Biotechnology Bldg., 526 Campus Road, Ithaca, NY 14853,
USA
COMMENT ##Genome-Assembly-Data-START##
Assembly Date :: 03-JUN-2022
Assembly Method :: raven v. 1.7.0; sourmash v. MAR-2022;
racon v. 1.4.20; POLCA (in MaSuRCA) v.
4.0.8; 3d-dna v. 180419
Assembly Name :: Nippo_1.0
Genome Representation :: Full
Expected Final Version :: Yes
Genome Coverage :: 76.0x
Sequencing Technology :: Oxford Nanopore PromethION; Illumina
HiSeq; Omni-C
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Nippostrongylus brasiliensis"
/mol_type="genomic DNA"
/strain="MIMR"
/db_xref="taxon:27835"
/chromosome="IV"
/sex="pooled male and female"
/tissue_type="Whole animal"
/dev_stage="Adults"
/geo_loc_name="USA: Laboratory of Meera Nair, UC Riverside
School of Medicine, Riverside, CA"
/collection_date="2021/2022"
protein /locus_tag="Q1695_006987"
/note="NIPPO_CHRIV.G10827.T5"
intron_pos 33:1 (1/31)
intron_pos 84:0 (2/31)
intron_pos 111:2 (3/31)
intron_pos 157:0 (4/31)
intron_pos 187:2 (5/31)
intron_pos 228:0 (6/31)
intron_pos 272:0 (7/31)
intron_pos 332:0 (8/31)
intron_pos 370:1 (9/31)
intron_pos 394:0 (10/31)
intron_pos 426:2 (11/31)
intron_pos 452:0 (12/31)
intron_pos 501:2 (13/31)
intron_pos 545:2 (14/31)
intron_pos 569:0 (15/31)
intron_pos 612:0 (16/31)
intron_pos 636:1 (17/31)
intron_pos 670:0 (18/31)
intron_pos 679:2 (19/31)
intron_pos 713:2 (20/31)
intron_pos 734:0 (21/31)
intron_pos 760:0 (22/31)
intron_pos 806:2 (23/31)
intron_pos 845:0 (24/31)
intron_pos 912:0 (25/31)
intron_pos 959:0 (26/31)
intron_pos 1000:0 (27/31)
intron_pos 1033:1 (28/31)
intron_pos 1069:1 (29/31)
intron_pos 1135:0 (30/31)
intron_pos 1164:2 (31/31)
BEGIN
1 MVSTWDRQVR LSVCTVNNWA LDFKGNLERI IKTCEAAHKE GARLRLGPEL EIPGYGCADH
61 FFEIDTEIHS WEILKKIADK SKEWPNLLIV TGMAVRHRML LYNCLVAVMN GELLLIRPKM
121 VLCDDDVYRE SRWFVRWSKP LTTTSFRLNK AFGFNQETVP FGDGVLQSSD NVSIGFEICE
181 ELWAAHSQHI ELGLRGVDII CNGSGSHHIL GKSNYRINQL ILGGSQKTGG IYLYSNHRGC
241 DGDRIYYDGG STIAQNGKLY AQIHQFDIED TSALLPEYNP ITFNGKITLD QSVAPLSQEI
301 KNFERLQLSP TEELCHGPPA WLWHYLRRSK MGGFFIPLSG GQDSSSVAAM VRLMCNKVCG
361 AVRHCRETGG DDDPAYYIHG ERVGEDPAEL CHKILFTCYM ASEHSSSETR DCADGLAKDI
421 NSNHSSIFID KVVAAVLAVF QFAKGFIPSF SSNDSREGLA LQNLQARIRM VLAYLFAQLS
481 LIVENRPGSL LVLGTSNVDE LLVGYLTKYD CSSADINPIG SISKADLRKF LRKVHDEYGM
541 KSLKAVIDSV PTAELRPLVN GEISQTDEDE IGLTYDELSV IGQLRRPRGL GPYGTFLALC
601 SLWHPQHSYE EIELKVKKFF WRYRVNRHKS TVATPAYHAA EYSPDDHRND HRPFLYPDME
661 YQFEMIRKKV AELNSSEARN LLMAATSEGP SQLFLATLPV TLLQPNRNGP EYRSSVVEVT
721 LKIVERRLDS GEKEYRVEIS RADEFEFLFA DGITRSKYQA LAKNWNLNVD FEDFPNRIVR
781 LLRERTGPSS PVQLTCTLNQ DLSICTFEMV HVIDMYTVRM PIELKAVRDK DLLCHVTNNM
841 RSLLKQLNTL KKENKQLTSE RDELKKTSDE LRDLREKADQ KLVLLEKQVK DAEKRITEEK
901 LKREEFEQDL QLERDERDSA LNTIENLKEE LAEAEKKCSE LEEDLDHCED ECEGLEQKLR
961 DANALCGRLR ADKQHLSDSL EKTMKDLNKA NHVISKYLKG ELRSPSDRSL DERKNELAAD
1021 LKMKESLIDD MTASLAEYKK KVEDLTKENA ELKDTLTVME AERSRNLRVI EMYRNQHRAT
1081 SSLAPTTSPS LFPTLGASGL LNGGSSLLNG RSSPLLGCVP STPTNLRNVL GRTLQTSTAL
1141 VTPSMRTTPP ALKGRLMDAT NRENVTPPNV AVGPALTQTS ATK
//