LOCUS WKY07069.1 2620 aa PRT INV 31-JUL-2023
DEFINITION Nippostrongylus brasiliensis hypothetical protein protein.
ACCESSION CP130735-3894
PROTEIN_ID WKY07069.1
SOURCE Nippostrongylus brasiliensis
ORGANISM Nippostrongylus brasiliensis
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
Rhabditina; Rhabditomorpha; Strongyloidea; Heligmosomidae;
Nippostrongylus.
REFERENCE 1 (bases 1 to 50441521)
AUTHORS Schwarz,E.M., Baniya,A., Rodriguez,I.M., Lu,D., Bobardt,S.D.,
Anesko,K., Baker,L., Gouil,Q., Ritchie,M.E., Jex,A.R., Nair,M.G.
and Dillman,A.R.
TITLE A Nippostrongylus brasiliensis chromosomal reference genome and its
transcriptomics
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 50441521)
AUTHORS Schwarz,E.M., Baniya,A., Rodriguez,I.M., Lu,D., Bobardt,S.D.,
Anesko,K., Baker,L., Gouil,Q., Ritchie,M.E., Jex,A.R., Nair,M.G.
and Dillman,A.R.
TITLE Direct Submission
JOURNAL Submitted (16-JUL-2023) Molecular Biology and Genetics, Cornell
University, Biotechnology Bldg., 526 Campus Road, Ithaca, NY 14853,
USA
COMMENT ##Genome-Assembly-Data-START##
Assembly Date :: 03-JUN-2022
Assembly Method :: raven v. 1.7.0; sourmash v. MAR-2022;
racon v. 1.4.20; POLCA (in MaSuRCA) v.
4.0.8; 3d-dna v. 180419
Assembly Name :: Nippo_1.0
Genome Representation :: Full
Expected Final Version :: Yes
Genome Coverage :: 76.0x
Sequencing Technology :: Oxford Nanopore PromethION; Illumina
HiSeq; Omni-C
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Nippostrongylus brasiliensis"
/mol_type="genomic DNA"
/strain="MIMR"
/db_xref="taxon:27835"
/chromosome="IV"
/sex="pooled male and female"
/tissue_type="Whole animal"
/dev_stage="Adults"
/geo_loc_name="USA: Laboratory of Meera Nair, UC Riverside
School of Medicine, Riverside, CA"
/collection_date="2021/2022"
protein /locus_tag="Q1695_006902"
/note="NIPPO_CHRIV.G10742.T1"
intron_pos 143:2 (1/54)
intron_pos 192:0 (2/54)
intron_pos 259:0 (3/54)
intron_pos 316:2 (4/54)
intron_pos 352:0 (5/54)
intron_pos 382:1 (6/54)
intron_pos 449:0 (7/54)
intron_pos 488:2 (8/54)
intron_pos 524:0 (9/54)
intron_pos 582:0 (10/54)
intron_pos 608:0 (11/54)
intron_pos 634:0 (12/54)
intron_pos 679:0 (13/54)
intron_pos 749:1 (14/54)
intron_pos 778:0 (15/54)
intron_pos 829:2 (16/54)
intron_pos 884:1 (17/54)
intron_pos 924:0 (18/54)
intron_pos 949:2 (19/54)
intron_pos 997:2 (20/54)
intron_pos 1044:1 (21/54)
intron_pos 1091:2 (22/54)
intron_pos 1131:2 (23/54)
intron_pos 1185:0 (24/54)
intron_pos 1212:1 (25/54)
intron_pos 1255:1 (26/54)
intron_pos 1330:2 (27/54)
intron_pos 1399:0 (28/54)
intron_pos 1432:2 (29/54)
intron_pos 1468:1 (30/54)
intron_pos 1540:1 (31/54)
intron_pos 1600:0 (32/54)
intron_pos 1649:0 (33/54)
intron_pos 1698:0 (34/54)
intron_pos 1734:1 (35/54)
intron_pos 1772:1 (36/54)
intron_pos 1822:0 (37/54)
intron_pos 1871:0 (38/54)
intron_pos 1902:1 (39/54)
intron_pos 1947:0 (40/54)
intron_pos 1990:2 (41/54)
intron_pos 2059:1 (42/54)
intron_pos 2098:0 (43/54)
intron_pos 2148:0 (44/54)
intron_pos 2190:0 (45/54)
intron_pos 2255:0 (46/54)
intron_pos 2320:0 (47/54)
intron_pos 2359:2 (48/54)
intron_pos 2408:0 (49/54)
intron_pos 2445:0 (50/54)
intron_pos 2469:0 (51/54)
intron_pos 2494:0 (52/54)
intron_pos 2528:1 (53/54)
intron_pos 2584:1 (54/54)
BEGIN
1 MTTILLFLFL PQIATVLSGE ITGRCSSCVP HPADITWISP SKPPCFHAGQ PIFDWPSTED
61 CPQPVRVHSE QISVDETGLV FAKHRLCFYF TFEFIDYTYD CYGTRLEGRF KLGHPVFSKQ
121 RRFKRWLRRR NPDLNTIHFQ QESYVKELAE SASPGTLIVT VKAVHAADQP IYYSLAAPQD
181 SRSQNIFTLD TISGEIRLAK SLDREILDKH VLKVTAYERL DPTVSSSATV IVDVLDVQDN
241 TPIFERDSYF ADIREDAPIG TTVLSVFARD LDAGANGELS YFLGDGEGRD LLSINTKSGV
301 IQTAAPLDRE TLALIRLDVI ATDNGEPPRN SSALVEIGIT DVNDNAPVFD QEIYNITVME
361 NSTLPITVAR LKATDKDSGV NGKVHYSIVG SSSVPLTVDY NTGDVVLRER LDARNSPFAV
421 LARAKDGAQP ALSTTVSLLL YVIDINDHAP KFIASQKRIF LEESAAVGEE VGRVYAIDED
481 SGENGIVRYS LNGSQDFSID PESGIIRTTT SLDRERTAIY VLEVLASDQG SPPLTSATEI
541 TVVVKDVNDN APEFLQKEYN FTLSEETPRG SQIVVLKAED KDAEQKIVYR IEQMDRDVVT
601 LIDLGEQGAL LTLSGQLHST DHLISLEVSA TDQGGLQGRC RVNLIVEDVN SAPYFTDQLF
661 AVRVPEDSPL GFHVITIKAE DSDRGRNAHL TYSIDSDEFA IDNKTGLITL AKQLDREERS
721 SYVVMVTVSD GADPPLNTTT QLEIIVDDVN DNAPKFSTQN YSVSIPEDIP VGTSFMQVSA
781 VDVDVGSNGI VDYFLNDSDA SLVYDLFRLD RTSGTLRVNS KLDREQYPHI ELKVFARDRG
841 KPSLTATSLI SIALTDVNDN APRFDQTHYD LYIAENSPVG STVGTIVATD PDEGENAVIQ
901 FRIFGGADAK LFDLELDDSQ PGVVRILTRA MFDYEAKSNK FYMEVQATSG QLSSMVVVRV
961 HVSDVNDNRP VLPDFIVLIN RLEFEAPITQ VGTVPAFDPD QNATLEFYME DNQLLSVEKF
1021 SGKLFLKNQW KRNLDTHFKT CVSDGPNTVC AKCRFIHVYL THDALREAAT VFLPKMTLDD
1081 FWDPPVFDRF RQSLASLDTW EEKNIFVVGA QHAVDGVEVS LVISDRGRIV KSWRVEELLR
1141 AEVKHLERLS LMRIEVVRDE SCAREPCPYY QKCRQTLKQM NTVELYQTDN FMARTLKTLK
1201 TFVCECPVGF ASSEDQPGQC DLRVDQCYSN PCRNNATCHP LENGYRCECK PEWRGEKCDV
1261 PLNSLTCIPK YCKGGALCEL QNRKMMCKHC GYGETDVDER CRLRSLGFDG KGLVSLHHSL
1321 SRIEWQLSFR IATIAREGVL LFSGDRSSDF IEISIQDRVL RAEFSLGNGS KVVRMENERR
1381 NRVNDGEWHT VHIIFYDRQL TLVLDECDAF VALHARGAAP CAAQAKIDLP AKCVDLSVPC
1441 FRFLDVYNGL FVGGRPALSG KVEEGFSGCI ANLTLNEQLI EFSSLAEMDV RGSVFEGCAH
1501 RKDFCADSPC SLEAKCVNRW NGANCRCPHS AHHTGTCSAE LSSPLRRPLT LTDEESFVTY
1561 RPLDISVPFT LSFEFRTSRA DIQMMAAEFE QRSTFFKLEI DDGLPKVSLG QHSAVIDAPE
1621 LHPGVWTKVD VEFREEEVRA TIDGIYSATI KQPLFDMTLD IVYAGLAPST GHPSRFDGCL
1681 RDVAINGDAQ AVSEKGKIRF GCIVPNRCTI DGVCPKESTC HREWNRHTCK CHRGFAGDTC
1741 QAVCSLAGVC ASNGFCVTTN TSRGYDCHCQ SGLVGPNCER SSAVQICPPG FWGEFPNCKK
1801 CVCAEGFETQ CDKNTGECIC PKFQFPLRNR CVSCECGYGA STLQCSVDGQ CKCSGEASGR
1861 RCDRCSLDNH VLDPKSLRCL PTRDHCPSQI EFGVQWPTTR RGSTARQSCP GTQSGLATRT
1921 CSSETKWLDV NSFNCTRPEF SVMVSKYDVL NSVELLNMLH NATKGSDSID GRNLEIAATA
1981 MHRIIDSELK LDELQQNHLK DLWFAESLVL AAGKIAAYQT PDAYLATVHK LTDYGTAVYK
2041 IHQQLSYLQP FQFSSEHIVF SMDAIDFWNV LPKFNNFIDR RPSRFPTVFI HVKNVTKVFY
2101 SILPNPRCSH CHSPLVMVLA NSSEPVRVEF ELDEKTGWRY PECVRLDHQR TSWSTNHANL
2161 VALNLTHAVC EFSEGGVFTL FAKADSGAFV RISHSATLAV PLMASVALLL CMVAMVLTLA
2221 SRTATARLIR LGFIATFVLN ATNLYFLNKS AVNRVRISHS ATLAVPLMAS VALLLCMVAM
2281 VLTLASRTAT ARLIRLGFIA TFVLNATNLY FLNKSAVNRA YCPVRNAVLS FTSCAPFAWL
2341 FLYSLHLYRM LSERPAKQSN LSLCLLMGVV LPGVISCGTY ALTTQCSMDP HFWLFWAIVL
2401 PIALMLLLCF YASATALLLS LNKQFDVVVV KIHLRRALCQ HFLLCSLTLL HTLVAVISPL
2461 FSISNPLKEL ICGITAVVAA LFILVWSIYP NGKASPNNTT TMWLDASQKS NMAESVAVGC
2521 ESPLLDEVHA DDSWSPEAIP SDPFLTSTPI RDRTDSREKE NPVVSAILSP ADKILSDGLG
2581 HVYGNMGTLP RFRTDEDDAD DAYYTYTRSK HYKPSTFSKS
//