LOCUS WKY07052.1 2096 aa PRT INV 31-JUL-2023
DEFINITION Nippostrongylus brasiliensis hypothetical protein protein.
ACCESSION CP130735-3877
PROTEIN_ID WKY07052.1
SOURCE Nippostrongylus brasiliensis
ORGANISM Nippostrongylus brasiliensis
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
Rhabditina; Rhabditomorpha; Strongyloidea; Heligmosomidae;
Nippostrongylus.
REFERENCE 1 (bases 1 to 50441521)
AUTHORS Schwarz,E.M., Baniya,A., Rodriguez,I.M., Lu,D., Bobardt,S.D.,
Anesko,K., Baker,L., Gouil,Q., Ritchie,M.E., Jex,A.R., Nair,M.G.
and Dillman,A.R.
TITLE A Nippostrongylus brasiliensis chromosomal reference genome and its
transcriptomics
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 50441521)
AUTHORS Schwarz,E.M., Baniya,A., Rodriguez,I.M., Lu,D., Bobardt,S.D.,
Anesko,K., Baker,L., Gouil,Q., Ritchie,M.E., Jex,A.R., Nair,M.G.
and Dillman,A.R.
TITLE Direct Submission
JOURNAL Submitted (16-JUL-2023) Molecular Biology and Genetics, Cornell
University, Biotechnology Bldg., 526 Campus Road, Ithaca, NY 14853,
USA
COMMENT ##Genome-Assembly-Data-START##
Assembly Date :: 03-JUN-2022
Assembly Method :: raven v. 1.7.0; sourmash v. MAR-2022;
racon v. 1.4.20; POLCA (in MaSuRCA) v.
4.0.8; 3d-dna v. 180419
Assembly Name :: Nippo_1.0
Genome Representation :: Full
Expected Final Version :: Yes
Genome Coverage :: 76.0x
Sequencing Technology :: Oxford Nanopore PromethION; Illumina
HiSeq; Omni-C
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Nippostrongylus brasiliensis"
/mol_type="genomic DNA"
/strain="MIMR"
/db_xref="taxon:27835"
/chromosome="IV"
/sex="pooled male and female"
/tissue_type="Whole animal"
/dev_stage="Adults"
/geo_loc_name="USA: Laboratory of Meera Nair, UC Riverside
School of Medicine, Riverside, CA"
/collection_date="2021/2022"
protein /locus_tag="Q1695_006889"
/note="NIPPO_CHRIV.G10729.T1"
intron_pos 65:1 (1/47)
intron_pos 135:2 (2/47)
intron_pos 194:0 (3/47)
intron_pos 220:1 (4/47)
intron_pos 269:1 (5/47)
intron_pos 285:0 (6/47)
intron_pos 312:0 (7/47)
intron_pos 340:0 (8/47)
intron_pos 386:2 (9/47)
intron_pos 430:2 (10/47)
intron_pos 481:2 (11/47)
intron_pos 534:0 (12/47)
intron_pos 571:0 (13/47)
intron_pos 620:2 (14/47)
intron_pos 662:0 (15/47)
intron_pos 706:0 (16/47)
intron_pos 728:0 (17/47)
intron_pos 771:0 (18/47)
intron_pos 799:1 (19/47)
intron_pos 848:2 (20/47)
intron_pos 876:0 (21/47)
intron_pos 904:1 (22/47)
intron_pos 945:2 (23/47)
intron_pos 989:2 (24/47)
intron_pos 1014:0 (25/47)
intron_pos 1071:0 (26/47)
intron_pos 1103:0 (27/47)
intron_pos 1150:1 (28/47)
intron_pos 1181:0 (29/47)
intron_pos 1237:0 (30/47)
intron_pos 1277:2 (31/47)
intron_pos 1324:0 (32/47)
intron_pos 1378:0 (33/47)
intron_pos 1420:0 (34/47)
intron_pos 1485:0 (35/47)
intron_pos 1538:0 (36/47)
intron_pos 1601:0 (37/47)
intron_pos 1658:0 (38/47)
intron_pos 1716:0 (39/47)
intron_pos 1773:0 (40/47)
intron_pos 1806:0 (41/47)
intron_pos 1839:0 (42/47)
intron_pos 1885:1 (43/47)
intron_pos 1947:2 (44/47)
intron_pos 1993:1 (45/47)
intron_pos 2024:0 (46/47)
intron_pos 2059:0 (47/47)
BEGIN
1 MLAERPSRAL AALVVCAFLA ALAAVLLIRR PPPITASTSL PHDDLILAQQ DQDVLHSVAR
61 AKYSGLRISS GRVFDVDRHF VRRRRGTTAT RRRSPGVRGV ARDCGATCHL RLRSDDVVYV
121 VHLQRWRQLA APLNKSRPVV ENADIVPLVQ YFDSDSSAKA RLSRAATDCI YRARVSDSED
181 SSIVNLCDSD DGLYGLLALP DGVYSVEPIL DDGPADSQPG RSRHRPHLIH RFQSQHFYPH
241 FDDLTNDTAT EPLANSSTYV NAQWEDILER QPRSRRSANS WDHYVLVVAD SKMHEYHGYN
301 LEAYILTLFS TVASIYRHQS LRASINVVVV KIIILKHENA GPHVTSNAQD TLQQFCRWQQ
361 LYNDRDDESP NHHDVAILLT RGDICRAPGK CDTLGLAELG TMCDAGKSCA IIEDNGLSAA
421 FTIAHELGHI FNIPHDDERK CSQYMQLVKH NFHIMAPTLE YNTHPWSWST CSSAMLERFL
481 DNNRGQIQCL FDQPVQRKYY EQLFEDDAPG RKYDVSQQCK FVFGPQSELC PYMPTCRRLW
541 CATYYGSQMG CRTQHMPWAD GTPCDKTGRM QCHRGECVSI GAEQRAKVDG GWGEWRMWET
601 CSRTCGGGVQ RALRDCDSPK PANGGKYCVG QRERYRSCNV ADCPWDTPGF REIQCAEFNN
661 KDVGIHGIPT RTTWVPKYTA VADNERCKLY CRVAGSAAFY LLKEKVIDGT PCDRNGDDIC
721 VDGTCLKAGC DHRLHSTVTR DKCGICGGDS TTCRTVKGTY NERGSFGYNA VMKIPAGSAN
781 IDIRQHGYNN QKDDDNYLSL RAANGEFLLN GHYQVSVFRQ QIPIQDVILE YSGSDNVVER
841 INGTGPIRID IYVHVLSVGN LLPPDISYEY MTAVESPSVR SPSQTNYHWR VGEQWSSCDR
901 TCQGTQTQEI LCVDLSTNRP THESLCTGRR PQSNTRMCNI DCFTKWVTED VSHCSAQCGS
961 GEKKQRVYCV MIEGGRQTIT RDEDCDRTTR PSERATCFVD CSGRRWSYSE WATCSQSCGS
1021 AGVSRRTVVC VDDHNRVVPD HLCMGEAKEA TERECNRFPC PRWVYGHWSE CSRSCDGGVR
1081 MRHAQCMDAA DKETHHSRCG PKHDREACNE QMCTAWSFGQ WSTCSVTCGD GIQTREAICV
1141 DRDGRSLDSA RCNYRERIVQ KPCSRPACPS WKVGEWTQCS VSCQDGWSTR RVSCVDSRGE
1201 DVRSELCTAS GQEQPPSHRQ CNLGPCPFWR TSDWSACSVS CGSGLRSRTA ECVYREQVVD
1261 QSFCGDSSPP TTKQSCTLVP CTTWEVSSWA PCSVSCGNGT QVRRVHCTSG PKKEPVKDFL
1321 CDKATRPRDR RTCERDACET RVSELLPQLA DVPPIRWATG PWSECSVPCG NGTQRRLVKC
1381 RDHQRDLPPE YCKDLEKVEV ERTCRVKVCA YWQSGPWMPC PATCGAHVQQ SRSVMCVARD
1441 SEETASETDC DVAQRPPSMR SCRLSVCPKG EPPLERWISG EWSKCSVTCG GGWRRRAVTC
1501 DGLICDDTKK PRMFDSCNNT PCPPKSNNTW QISPWTHCSV TCGGGVQRRR VWCEDAVSAK
1561 SQDESECVET KPTTQRDCEL SPCPTSQVSR ATWLAAPWSS CSAKCGRGVR RRTVACIDLA
1621 TNATVASSRC NASSRPVDEH KCRVMHCPRW RGTPWSACST TCGQGVRHRE VYCQRGRRMR
1681 APDSVCDANR RPATVSNCYL TACPAYHWTT TTWSKCIDSC ARGEQTRRVY CVNNAGKRAA
1741 PRMCDAVHAP PSKRQCDISK CPYEWVPGPW NTCSKTCGKG TQFRFVECRV KTPNATKLSE
1801 PAVPKEKCDA LPMPNESQDC DLNACESEFQ WQIGPWGACS QTCGQGVRRR KVRCYNRMGV
1861 LVARGHCEQN SPRPRRTQTC FQRNCLPATC QEIRAQNLSS HSVDGNYTVL LDGFPVVVYC
1921 HRMNETIPKS YINLNPETNF AEVYGKRLIY PHTCPFNGER NDSCQCSDDG DANAGMTHFR
1981 KVRVDLLNRK INLNDGAFAD TLHGSFVPYG TAGDCYSMKD CPQGRFSVDL RGTGLKIVDD
2041 LQWEDKGHRT TSRIDRSSNN AVIDGRCGGY CGKCAPDKYK GLVFSIDQKQ INSGGS
//