LOCUS WKY07037.1 970 aa PRT INV 31-JUL-2023
DEFINITION Nippostrongylus brasiliensis hypothetical protein protein.
ACCESSION CP130735-3860
PROTEIN_ID WKY07037.1
SOURCE Nippostrongylus brasiliensis
ORGANISM Nippostrongylus brasiliensis
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
Rhabditina; Rhabditomorpha; Strongyloidea; Heligmosomidae;
Nippostrongylus.
REFERENCE 1 (bases 1 to 50441521)
AUTHORS Schwarz,E.M., Baniya,A., Rodriguez,I.M., Lu,D., Bobardt,S.D.,
Anesko,K., Baker,L., Gouil,Q., Ritchie,M.E., Jex,A.R., Nair,M.G.
and Dillman,A.R.
TITLE A Nippostrongylus brasiliensis chromosomal reference genome and its
transcriptomics
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 50441521)
AUTHORS Schwarz,E.M., Baniya,A., Rodriguez,I.M., Lu,D., Bobardt,S.D.,
Anesko,K., Baker,L., Gouil,Q., Ritchie,M.E., Jex,A.R., Nair,M.G.
and Dillman,A.R.
TITLE Direct Submission
JOURNAL Submitted (16-JUL-2023) Molecular Biology and Genetics, Cornell
University, Biotechnology Bldg., 526 Campus Road, Ithaca, NY 14853,
USA
COMMENT ##Genome-Assembly-Data-START##
Assembly Date :: 03-JUN-2022
Assembly Method :: raven v. 1.7.0; sourmash v. MAR-2022;
racon v. 1.4.20; POLCA (in MaSuRCA) v.
4.0.8; 3d-dna v. 180419
Assembly Name :: Nippo_1.0
Genome Representation :: Full
Expected Final Version :: Yes
Genome Coverage :: 76.0x
Sequencing Technology :: Oxford Nanopore PromethION; Illumina
HiSeq; Omni-C
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Nippostrongylus brasiliensis"
/mol_type="genomic DNA"
/strain="MIMR"
/db_xref="taxon:27835"
/chromosome="IV"
/sex="pooled male and female"
/tissue_type="Whole animal"
/dev_stage="Adults"
/geo_loc_name="USA: Laboratory of Meera Nair, UC Riverside
School of Medicine, Riverside, CA"
/collection_date="2021/2022"
protein /locus_tag="Q1695_006877"
/note="NIPPO_CHRIV.G10717.T1"
intron_pos 8:1 (1/25)
intron_pos 49:2 (2/25)
intron_pos 93:0 (3/25)
intron_pos 135:0 (4/25)
intron_pos 183:2 (5/25)
intron_pos 213:0 (6/25)
intron_pos 250:0 (7/25)
intron_pos 282:0 (8/25)
intron_pos 332:2 (9/25)
intron_pos 391:1 (10/25)
intron_pos 414:0 (11/25)
intron_pos 458:1 (12/25)
intron_pos 486:0 (13/25)
intron_pos 526:0 (14/25)
intron_pos 575:0 (15/25)
intron_pos 617:0 (16/25)
intron_pos 650:0 (17/25)
intron_pos 670:1 (18/25)
intron_pos 717:2 (19/25)
intron_pos 743:0 (20/25)
intron_pos 790:0 (21/25)
intron_pos 825:0 (22/25)
intron_pos 855:1 (23/25)
intron_pos 891:0 (24/25)
intron_pos 955:0 (25/25)
BEGIN
1 MFDVIFPDRD RDRDRDRDRR DRDRRDRKRS RSRERERERE RRRSRSRSRS PRRERDRKKQ
61 DKSKEKEKRK NDEAEKKKQD KDITDIVEMK DKVEAGSELE RIMEERRRKV EIWRARRNKA
121 ANSVESAPKE EKDEPSTSNG SGKSEKKVWS LEDEDDDDEE MLDVKQEPAS ENGIDVKPAD
181 EKKKEVDEDD EEDPLDAFMS GLTKDMHKDR PSGGVRIVTI NAAKEKEKGT VLENEDRSDF
241 VVEDIDMEQA AASLCHKGRM LPTTDHSKVY YRPFRKDFYV ETPEIAKMTK EEVRAYREEL
301 DGIEIKGNKC PKPIKTWAQC GVEFKILQQL KRLNYTKPTP IQAQAIPCIM GGRDIIGIAK
361 TGSGKTLAFL LPMFRHILDQ PELEELDGPI AIIMSPTREL AMQTWKEANK FAKVLDIRVV
421 CVYGGVGISE QIADLKRGAE VIVCTPGRMI DMLAANSGKV TNLRRVTYLV LDEADRMFDM
481 GFEPQVTKII NNIRPDRQTV LFSATFPRQM EALARKILEK PIEIQVGGKS VVCADVTQNA
541 VICEEHQKLL KLLELLGMYY EQGNVIVFVD KQEKADDIVS QLMRNGYSCA PLHGGIDQFD
601 RDSTITDFKS GTIKILVATS VAARGLDVKN LILVVNYDCP NHYEDYVHRV GRTGRAGNKG
661 YAYTFILPEH QERMAGEVCR AFETAGAKPP AELKAMFEKF KAEMAAQGKT VHLGGKGFAG
721 SGYKYDEDEA EAEATKKKMT RLVCGMEHGA DDDDELDEQL SMMIKSKRRV VEGQMGQGAL
781 RKNVDVEDKV AKAKAMAEKL ASLRNLNAPA EKDAAQKAAE AIMKGGDIAP IEMTSKMIAK
841 QLADKLNEKL NYLGGEAMPE MNQEEEWQYF EEELDINDFP QQVRYRVCSR ESLGHISEFA
901 DVGISVKGSH YPPGKEPKEG ERKLYLLLEA RHERNLKCAK EEIIRIMKDA FRQLTAQMQR
961 GGPTGRYKVF
//