LOCUS WKY07036.1 966 aa PRT INV 31-JUL-2023
DEFINITION Nippostrongylus brasiliensis hypothetical protein protein.
ACCESSION CP130735-3861
PROTEIN_ID WKY07036.1
SOURCE Nippostrongylus brasiliensis
ORGANISM Nippostrongylus brasiliensis
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
Rhabditina; Rhabditomorpha; Strongyloidea; Heligmosomidae;
Nippostrongylus.
REFERENCE 1 (bases 1 to 50441521)
AUTHORS Schwarz,E.M., Baniya,A., Rodriguez,I.M., Lu,D., Bobardt,S.D.,
Anesko,K., Baker,L., Gouil,Q., Ritchie,M.E., Jex,A.R., Nair,M.G.
and Dillman,A.R.
TITLE A Nippostrongylus brasiliensis chromosomal reference genome and its
transcriptomics
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 50441521)
AUTHORS Schwarz,E.M., Baniya,A., Rodriguez,I.M., Lu,D., Bobardt,S.D.,
Anesko,K., Baker,L., Gouil,Q., Ritchie,M.E., Jex,A.R., Nair,M.G.
and Dillman,A.R.
TITLE Direct Submission
JOURNAL Submitted (16-JUL-2023) Molecular Biology and Genetics, Cornell
University, Biotechnology Bldg., 526 Campus Road, Ithaca, NY 14853,
USA
COMMENT ##Genome-Assembly-Data-START##
Assembly Date :: 03-JUN-2022
Assembly Method :: raven v. 1.7.0; sourmash v. MAR-2022;
racon v. 1.4.20; POLCA (in MaSuRCA) v.
4.0.8; 3d-dna v. 180419
Assembly Name :: Nippo_1.0
Genome Representation :: Full
Expected Final Version :: Yes
Genome Coverage :: 76.0x
Sequencing Technology :: Oxford Nanopore PromethION; Illumina
HiSeq; Omni-C
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Nippostrongylus brasiliensis"
/mol_type="genomic DNA"
/strain="MIMR"
/db_xref="taxon:27835"
/chromosome="IV"
/sex="pooled male and female"
/tissue_type="Whole animal"
/dev_stage="Adults"
/geo_loc_name="USA: Laboratory of Meera Nair, UC Riverside
School of Medicine, Riverside, CA"
/collection_date="2021/2022"
protein /locus_tag="Q1695_006877"
/note="NIPPO_CHRIV.G10717.T3"
intron_pos 49:2 (1/24)
intron_pos 89:0 (2/24)
intron_pos 131:0 (3/24)
intron_pos 179:2 (4/24)
intron_pos 209:0 (5/24)
intron_pos 246:0 (6/24)
intron_pos 278:0 (7/24)
intron_pos 328:2 (8/24)
intron_pos 387:1 (9/24)
intron_pos 410:0 (10/24)
intron_pos 454:1 (11/24)
intron_pos 482:0 (12/24)
intron_pos 522:0 (13/24)
intron_pos 571:0 (14/24)
intron_pos 613:0 (15/24)
intron_pos 646:0 (16/24)
intron_pos 666:1 (17/24)
intron_pos 713:2 (18/24)
intron_pos 739:0 (19/24)
intron_pos 786:0 (20/24)
intron_pos 821:0 (21/24)
intron_pos 851:1 (22/24)
intron_pos 887:0 (23/24)
intron_pos 951:0 (24/24)
BEGIN
1 MGKESRSDRD RDRDRDRDRR DRDRRDRKRS RSRERERERE RRRSRSRSRE RDRKKQDKSK
61 EKEKRKNDEA EKKKQDKDIT DIVEMKDKVE AGSELERIME ERRRKVEIWR ARRNKAANSV
121 ESAPKEEKDE PSTSNGSGKS EKKVWSLEDE DDDDEEMLDV KQEPASENGI DVKPADEKKK
181 EVDEDDEEDP LDAFMSGLTK DMHKDRPSGG VRIVTINAAK EKEKGTVLEN EDRSDFVVED
241 IDMEQAAASL CHKGRMLPTT DHSKVYYRPF RKDFYVETPE IAKMTKEEVR AYREELDGIE
301 IKGNKCPKPI KTWAQCGVEF KILQQLKRLN YTKPTPIQAQ AIPCIMGGRD IIGIAKTGSG
361 KTLAFLLPMF RHILDQPELE ELDGPIAIIM SPTRELAMQT WKEANKFAKV LDIRVVCVYG
421 GVGISEQIAD LKRGAEVIVC TPGRMIDMLA ANSGKVTNLR RVTYLVLDEA DRMFDMGFEP
481 QVTKIINNIR PDRQTVLFSA TFPRQMEALA RKILEKPIEI QVGGKSVVCA DVTQNAVICE
541 EHQKLLKLLE LLGMYYEQGN VIVFVDKQEK ADDIVSQLMR NGYSCAPLHG GIDQFDRDST
601 ITDFKSGTIK ILVATSVAAR GLDVKNLILV VNYDCPNHYE DYVHRVGRTG RAGNKGYAYT
661 FILPEHQERM AGEVCRAFET AGAKPPAELK AMFEKFKAEM AAQGKTVHLG GKGFAGSGYK
721 YDEDEAEAEA TKKKMTRLVC GMEHGADDDD ELDEQLSMMI KSKRRVVEGQ MGQGALRKNV
781 DVEDKVAKAK AMAEKLASLR NLNAPAEKDA AQKAAEAIMK GGDIAPIEMT SKMIAKQLAD
841 KLNEKLNYLG GEAMPEMNQE EEWQYFEEEL DINDFPQQVR YRVCSRESLG HISEFADVGI
901 SVKGSHYPPG KEPKEGERKL YLLLEARHER NLKCAKEEII RIMKDAFRQL TAQMQRGGPT
961 GRYKVF
//