LOCUS WKY06993.1 1596 aa PRT INV 31-JUL-2023
DEFINITION Nippostrongylus brasiliensis hypothetical protein protein.
ACCESSION CP130735-3816
PROTEIN_ID WKY06993.1
SOURCE Nippostrongylus brasiliensis
ORGANISM Nippostrongylus brasiliensis
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
Rhabditina; Rhabditomorpha; Strongyloidea; Heligmosomidae;
Nippostrongylus.
REFERENCE 1 (bases 1 to 50441521)
AUTHORS Schwarz,E.M., Baniya,A., Rodriguez,I.M., Lu,D., Bobardt,S.D.,
Anesko,K., Baker,L., Gouil,Q., Ritchie,M.E., Jex,A.R., Nair,M.G.
and Dillman,A.R.
TITLE A Nippostrongylus brasiliensis chromosomal reference genome and its
transcriptomics
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 50441521)
AUTHORS Schwarz,E.M., Baniya,A., Rodriguez,I.M., Lu,D., Bobardt,S.D.,
Anesko,K., Baker,L., Gouil,Q., Ritchie,M.E., Jex,A.R., Nair,M.G.
and Dillman,A.R.
TITLE Direct Submission
JOURNAL Submitted (16-JUL-2023) Molecular Biology and Genetics, Cornell
University, Biotechnology Bldg., 526 Campus Road, Ithaca, NY 14853,
USA
COMMENT ##Genome-Assembly-Data-START##
Assembly Date :: 03-JUN-2022
Assembly Method :: raven v. 1.7.0; sourmash v. MAR-2022;
racon v. 1.4.20; POLCA (in MaSuRCA) v.
4.0.8; 3d-dna v. 180419
Assembly Name :: Nippo_1.0
Genome Representation :: Full
Expected Final Version :: Yes
Genome Coverage :: 76.0x
Sequencing Technology :: Oxford Nanopore PromethION; Illumina
HiSeq; Omni-C
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Nippostrongylus brasiliensis"
/mol_type="genomic DNA"
/strain="MIMR"
/db_xref="taxon:27835"
/chromosome="IV"
/sex="pooled male and female"
/tissue_type="Whole animal"
/dev_stage="Adults"
/geo_loc_name="USA: Laboratory of Meera Nair, UC Riverside
School of Medicine, Riverside, CA"
/collection_date="2021/2022"
protein /locus_tag="Q1695_006852"
/note="NIPPO_CHRIV.G10692.T1"
intron_pos 16:0 (1/42)
intron_pos 55:1 (2/42)
intron_pos 84:2 (3/42)
intron_pos 136:0 (4/42)
intron_pos 176:1 (5/42)
intron_pos 212:1 (6/42)
intron_pos 267:2 (7/42)
intron_pos 311:2 (8/42)
intron_pos 348:0 (9/42)
intron_pos 387:1 (10/42)
intron_pos 418:0 (11/42)
intron_pos 442:1 (12/42)
intron_pos 471:0 (13/42)
intron_pos 505:1 (14/42)
intron_pos 553:0 (15/42)
intron_pos 605:0 (16/42)
intron_pos 640:1 (17/42)
intron_pos 662:2 (18/42)
intron_pos 715:1 (19/42)
intron_pos 757:0 (20/42)
intron_pos 790:0 (21/42)
intron_pos 821:1 (22/42)
intron_pos 859:0 (23/42)
intron_pos 883:0 (24/42)
intron_pos 911:0 (25/42)
intron_pos 949:0 (26/42)
intron_pos 989:0 (27/42)
intron_pos 1021:2 (28/42)
intron_pos 1053:0 (29/42)
intron_pos 1079:2 (30/42)
intron_pos 1116:0 (31/42)
intron_pos 1136:0 (32/42)
intron_pos 1186:0 (33/42)
intron_pos 1245:2 (34/42)
intron_pos 1284:1 (35/42)
intron_pos 1324:2 (36/42)
intron_pos 1357:0 (37/42)
intron_pos 1392:1 (38/42)
intron_pos 1442:1 (39/42)
intron_pos 1474:1 (40/42)
intron_pos 1516:0 (41/42)
intron_pos 1577:2 (42/42)
BEGIN
1 MSSGGGGGAL RTIINIVLLV LVLAILGISI AVLVEVIQTK NNVNNNNVVN PSKTVNDLNV
61 VAPQPISSGS ANYPGYQTAV QLFKSSLNTS VNPCEDFYAY TCGNFTGDMS FDDSDNSNID
121 NMVKQLTNTT YINSAPSPVQ QVAWYFDQCV ASMMNWTAVV KDGRYVMNAI NRVAAGEQGY
181 LNETQFPFYM LYQSKTPQAT FPDPVGLGFL FGYPAGNENA PNLVTPSVDT NWKDPHGKSG
241 YSYFIDQPST LLPYTYHAKI WDQYQVLLNM SIISTMNTLA TTQGLKLDQK KLAADAWDIV
301 QFDHLLAMTY STDDSTRRQY DRSYNPMTLA QLRATYPKIS WHTFLPESVL NAPQVMGKLL
361 ADNTTNFIVM EPLKLQMLHD ALGSTTFATT RTLVNYVYYQ VVATNADFLP KPANSEEYAL
421 EEVQRVRVQR PSPGKRRRIR PEQRRFKRQH YNDFTEAQGN CAMETVFVLQ YANARAFIDK
481 VYPSSESRQQ MRDHVAKVAS SILIGFRSML DQLNWMTAAT KKGAYNKIDH LVKNIAYPDW
541 ITNDTALTAY HKNLGIEVNK DDYLTMVRRA SMFNSYLSWS SLVAGPVNRQ DFLGPPGTTN
601 AWYQPELNSI TFPAAILHQP FYDPSWPTSV NFGGLGVVAG HELTHGFDDE GVQWEGTGIL
661 SGWMDDPSKA AFGTMADCVV KEYDGFCPLN KTAYGSAACL DGAQTQGENI ADNGGIHAAF
721 RAYRNFINLY GPDPQLPDSL LQEFTYDQLF FLSFAKVWCQ QTPSDSRMET QILVDPHSPS
781 KYRVWGTIQN FPAFKDAFHC PSSPYAPDKH CDVWVSDIDS SYGEPVVKSE LNIIADNQIT
841 SGDVNKYYAY KQAVNFYQPS VNISADPCND FFNYACGSYD KVVSFHYADA NNLNIMANQL
901 YSPSYQATVK SSTALTKEKA FTDACVNATL SNTTTQSILV TNNYLLPRVR KLAAALGSDF
961 TYVYGGNVAA LPDKTQLANG LAYLSFQQSI DTLVTPLVDT NWIDPTKGYR MFLDQNTAYM
1021 SKTYYQPDAF HTTEDQYVTT ATSVVARFMK EQNMTVPTDL RTKIQGLVEF EQMIALTYST
1081 DDTTRRSYKR SWNLQSVTDL NTNYPFLDWK TYLNQVPSTG RAVVTAAGYQ VSVMELEQYK
1141 KFSTDYVNKA ANLDQTKLVN YLFLRLLLQN AQYLPTYANT FEGMPEEPFV LGRKRRGYRR
1201 VRTDNLSDTR TSCTDKANDL MQFANGRVFI DYLYPDENSR ESIRRTAGGV IQNVIHSFQG
1261 MVDQLDWMTV DVKKKAYDKT AGIVQNIAFP DWILNNTQLD LYYKDLTFDP TKENYYDIWT
1321 KLTSFNLGVQ YKQLTAAATD RKDFLGQPGT VNAWYQPELN SITFPAGILQ PPYFHPLWPA
1381 SINYGGMGLV AGHELTHGFD DEGVQWGPGG ELSPPANENC TGWMDEQSSS EFKLMAQCVI
1441 DEYSTFCPLD PKKYTPNCVN GAQTQGENIA DNGGIHAAFR AYRTHIALDG PDPLLPDRLF
1501 GQFSHDQLFF LNFAQVWCEK RRTDDLLYKQ LMVDPHSPSM YRVFGTIQNY PAFQVAYNCP
1561 INSAYAPASH CNVWVPKMQK LKLSVAFCPA SVRLGP
//