LOCUS WKY06796.1 1826 aa PRT INV 31-JUL-2023
DEFINITION Nippostrongylus brasiliensis hypothetical protein protein.
ACCESSION CP130735-3620
PROTEIN_ID WKY06796.1
SOURCE Nippostrongylus brasiliensis
ORGANISM Nippostrongylus brasiliensis
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
Rhabditina; Rhabditomorpha; Strongyloidea; Heligmosomidae;
Nippostrongylus.
REFERENCE 1 (bases 1 to 50441521)
AUTHORS Schwarz,E.M., Baniya,A., Rodriguez,I.M., Lu,D., Bobardt,S.D.,
Anesko,K., Baker,L., Gouil,Q., Ritchie,M.E., Jex,A.R., Nair,M.G.
and Dillman,A.R.
TITLE A Nippostrongylus brasiliensis chromosomal reference genome and its
transcriptomics
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 50441521)
AUTHORS Schwarz,E.M., Baniya,A., Rodriguez,I.M., Lu,D., Bobardt,S.D.,
Anesko,K., Baker,L., Gouil,Q., Ritchie,M.E., Jex,A.R., Nair,M.G.
and Dillman,A.R.
TITLE Direct Submission
JOURNAL Submitted (16-JUL-2023) Molecular Biology and Genetics, Cornell
University, Biotechnology Bldg., 526 Campus Road, Ithaca, NY 14853,
USA
COMMENT ##Genome-Assembly-Data-START##
Assembly Date :: 03-JUN-2022
Assembly Method :: raven v. 1.7.0; sourmash v. MAR-2022;
racon v. 1.4.20; POLCA (in MaSuRCA) v.
4.0.8; 3d-dna v. 180419
Assembly Name :: Nippo_1.0
Genome Representation :: Full
Expected Final Version :: Yes
Genome Coverage :: 76.0x
Sequencing Technology :: Oxford Nanopore PromethION; Illumina
HiSeq; Omni-C
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Nippostrongylus brasiliensis"
/mol_type="genomic DNA"
/strain="MIMR"
/db_xref="taxon:27835"
/chromosome="IV"
/sex="pooled male and female"
/tissue_type="Whole animal"
/dev_stage="Adults"
/geo_loc_name="USA: Laboratory of Meera Nair, UC Riverside
School of Medicine, Riverside, CA"
/collection_date="2021/2022"
protein /locus_tag="Q1695_006741"
/note="NIPPO_CHRIV.G10581.T1"
intron_pos 37:1 (1/48)
intron_pos 60:0 (2/48)
intron_pos 104:0 (3/48)
intron_pos 141:1 (4/48)
intron_pos 182:0 (5/48)
intron_pos 228:2 (6/48)
intron_pos 271:1 (7/48)
intron_pos 319:0 (8/48)
intron_pos 353:0 (9/48)
intron_pos 393:2 (10/48)
intron_pos 436:0 (11/48)
intron_pos 473:0 (12/48)
intron_pos 487:1 (13/48)
intron_pos 536:2 (14/48)
intron_pos 578:2 (15/48)
intron_pos 607:0 (16/48)
intron_pos 638:0 (17/48)
intron_pos 682:2 (18/48)
intron_pos 716:0 (19/48)
intron_pos 761:0 (20/48)
intron_pos 792:2 (21/48)
intron_pos 829:2 (22/48)
intron_pos 860:0 (23/48)
intron_pos 894:0 (24/48)
intron_pos 933:0 (25/48)
intron_pos 974:0 (26/48)
intron_pos 1004:0 (27/48)
intron_pos 1040:2 (28/48)
intron_pos 1064:0 (29/48)
intron_pos 1100:0 (30/48)
intron_pos 1129:0 (31/48)
intron_pos 1159:2 (32/48)
intron_pos 1212:0 (33/48)
intron_pos 1279:2 (34/48)
intron_pos 1329:0 (35/48)
intron_pos 1351:0 (36/48)
intron_pos 1389:1 (37/48)
intron_pos 1435:0 (38/48)
intron_pos 1462:1 (39/48)
intron_pos 1488:1 (40/48)
intron_pos 1523:0 (41/48)
intron_pos 1580:0 (42/48)
intron_pos 1625:0 (43/48)
intron_pos 1666:0 (44/48)
intron_pos 1695:2 (45/48)
intron_pos 1727:1 (46/48)
intron_pos 1751:2 (47/48)
intron_pos 1783:0 (48/48)
BEGIN
1 MSARKSVDNI CASLAKQGDQ GGKSAKSKKK KSSSPKKRQN DPTEELPEDD FQDQPDSDED
61 FEASELSEGS SFEVEISDND SDVEAVHNTQ PGTSRLTAPL VEQTVTSKPK KVSKANRDFS
121 PLLDLLDVAP VTTTNFCSSG GTPYLSYSEE IWSPLFLYRL PSDIVISTIR EHGTEGLGRI
181 EIGRKMGMDT SSKAGNRRVS SYIVTACNEH PDHIGQFQKM EGKIRCIKYF WKAESEPEQF
241 KKLFSDFEKA TGEPCPFQLG QVIKFPNSNL STLRVSDVTL RRLNDILEIV AKKRVIVTVH
301 KLLKLIHERE HSYGYDFMID KKSLLKCFKA LEGVGLLRLF ETAVIAESVE NKIQIVCHKD
361 ISSPDDPEVI HAVQATIDEY HQEGRVFPHG QLRYSVKKRG DVEATARVPE AYDTIVKTTA
421 NGIDLTSRYR LLRLQSSRTT VMNAKKSADR STVGEGSPCP DGETPTNGNT DRIASFVAGQ
481 LGEAAEEPPR PSRPDLEFST EYGYQTKAIR CFVVHELVFQ FVYGHAEGTR PTCFDLFPPG
541 DSFHSWPVPS DEAIEVFVPE ESPLRFLPPH PPFSDVPRGW FMLQDFLFAL PLSAFVLIVH
601 VNKKVNKEQL QSYLNDPIRR HICIGYLPNE MRVPLLKDKK VIRQLEHIML TLCALGVMAI
661 APNPDLKRFA SPKSSVFYVS RKGLLYDTST SGRGYASVTL PLSMYDKYEY QFNNIDDVIL
721 YWHHLRAIVQ STPLAFRNDV NSEEISQARH KKYSLGLFDK SLVTRDPART IESIEPLGPN
781 EGCAGFDSAL YIHLRRHWDV DPGQTSNVGW FIARFRKQSD KVRSLVESRV ANLKKDWNSY
841 VKSLMPSEME LLKSKKKKNA ALKDGFFPST RAPVAIDPTA KKRPQLKKAN TITPKGMKPA
901 RSKKRPMDSV DLISSQNRLH MRSKFNSRER DMLILIRAVG FFLNPVYRFW LDPAVVRDIM
961 HENIPESRCK TVQSLMAAGV REMVRPARLA YLQRIVRNLS TFQEMRNLRF MLASSPLSTP
1021 ESKSLFFKNA FDVANRLLFM ESQTLPVAAT SDKQFEDFLK SSRLKISPEQ ASSNPIPLRS
1081 QAPSELSSIH HCVAVNILLS ILIHSTDGAF SESILDQISA SVISNALQIL RADGLVSRSR
1141 GLDPQLMVIT KNQAVLSYYF RHFFAHRFHP DIVEQVLETV KAVDECTEEA DELEGDDPGA
1201 VVTASSAFCS NRSIEVYVDE EVFNMFESAA LDQSSQTIKQ IRYLENADLH LEKIHVFECG
1261 LPEPLELPSW RNLLPLIDWS QPADCYPPQP FEQFLLDIPV DDRKILRAVY KAISSTAAFG
1321 AKLNDIVVDA SSWTREEIKD TVKALEIAHQ IISVGVDMQR WVIAEYATAW CVNVGGRIVC
1381 PRPWTMPTGE ICPSTVRWMA ESVLMSAVSC PGITVKEVCF RIEFALQTAA VYDMITILEA
1441 AGCVEVAEDM FENMTLSSPF QEQSGEVVVT YIRPVVDCVE RFARIFGDIP LLPAMMGRSE
1501 TEKEEMRVVC RPDELFDTKD MNWHLFSSRE ETSMTNGAVT EPPVPSWLSW SYWRGNTTPS
1561 SHSASNQPKE TVTRVVAAEE TAPSSSRSLE PVVDCAVDPA ELSGWERIRL LYTQPSMERD
1621 CTIRMTRTAF LSGFLLGGAS TYMQAHETYE RSNVGRKYLS KSDAFKRRMD YAIVRFAKSG
1681 FVMGGKCALI CGSIVVLSTH LAAYRQRFSS WYFPALSGAL AVALHEVGGV FMFPLGLIGS
1741 LKAVGLGLTS GLTLSAVLHL YALSMDKSVN DAYFVFKKEY EKELRYNIEF ERRVEEIMKS
1801 GGARWRADAV AMVKKQDEEK LTDHDA
//