LOCUS WKY06711.1 1458 aa PRT INV 31-JUL-2023
DEFINITION Nippostrongylus brasiliensis hypothetical protein protein.
ACCESSION CP130735-3538
PROTEIN_ID WKY06711.1
SOURCE Nippostrongylus brasiliensis
ORGANISM Nippostrongylus brasiliensis
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
Rhabditina; Rhabditomorpha; Strongyloidea; Heligmosomidae;
Nippostrongylus.
REFERENCE 1 (bases 1 to 50441521)
AUTHORS Schwarz,E.M., Baniya,A., Rodriguez,I.M., Lu,D., Bobardt,S.D.,
Anesko,K., Baker,L., Gouil,Q., Ritchie,M.E., Jex,A.R., Nair,M.G.
and Dillman,A.R.
TITLE A Nippostrongylus brasiliensis chromosomal reference genome and its
transcriptomics
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 50441521)
AUTHORS Schwarz,E.M., Baniya,A., Rodriguez,I.M., Lu,D., Bobardt,S.D.,
Anesko,K., Baker,L., Gouil,Q., Ritchie,M.E., Jex,A.R., Nair,M.G.
and Dillman,A.R.
TITLE Direct Submission
JOURNAL Submitted (16-JUL-2023) Molecular Biology and Genetics, Cornell
University, Biotechnology Bldg., 526 Campus Road, Ithaca, NY 14853,
USA
COMMENT ##Genome-Assembly-Data-START##
Assembly Date :: 03-JUN-2022
Assembly Method :: raven v. 1.7.0; sourmash v. MAR-2022;
racon v. 1.4.20; POLCA (in MaSuRCA) v.
4.0.8; 3d-dna v. 180419
Assembly Name :: Nippo_1.0
Genome Representation :: Full
Expected Final Version :: Yes
Genome Coverage :: 76.0x
Sequencing Technology :: Oxford Nanopore PromethION; Illumina
HiSeq; Omni-C
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Nippostrongylus brasiliensis"
/mol_type="genomic DNA"
/strain="MIMR"
/db_xref="taxon:27835"
/chromosome="IV"
/sex="pooled male and female"
/tissue_type="Whole animal"
/dev_stage="Adults"
/geo_loc_name="USA: Laboratory of Meera Nair, UC Riverside
School of Medicine, Riverside, CA"
/collection_date="2021/2022"
protein /locus_tag="Q1695_006694"
/note="NIPPO_CHRIV.G10534.T3"
intron_pos 23:0 (1/36)
intron_pos 49:0 (2/36)
intron_pos 79:2 (3/36)
intron_pos 142:0 (4/36)
intron_pos 180:2 (5/36)
intron_pos 211:0 (6/36)
intron_pos 259:1 (7/36)
intron_pos 294:2 (8/36)
intron_pos 339:0 (9/36)
intron_pos 400:0 (10/36)
intron_pos 433:1 (11/36)
intron_pos 453:1 (12/36)
intron_pos 515:1 (13/36)
intron_pos 563:2 (14/36)
intron_pos 595:1 (15/36)
intron_pos 635:0 (16/36)
intron_pos 664:0 (17/36)
intron_pos 691:0 (18/36)
intron_pos 720:2 (19/36)
intron_pos 796:1 (20/36)
intron_pos 823:0 (21/36)
intron_pos 863:0 (22/36)
intron_pos 886:0 (23/36)
intron_pos 927:1 (24/36)
intron_pos 944:0 (25/36)
intron_pos 992:1 (26/36)
intron_pos 1015:0 (27/36)
intron_pos 1046:1 (28/36)
intron_pos 1103:1 (29/36)
intron_pos 1164:1 (30/36)
intron_pos 1209:0 (31/36)
intron_pos 1244:1 (32/36)
intron_pos 1301:0 (33/36)
intron_pos 1342:0 (34/36)
intron_pos 1379:0 (35/36)
intron_pos 1409:0 (36/36)
BEGIN
1 MKMNIRLKIM DQTDHRFEVD DQTLLSDFRL QVAERLHIPP DRQRIIFAGH VLKNENSTLS
61 ACGLQDGHVV HLVERPADMP FLPTEGETND AAAQAHQHNN HHHHGRFFQN MFGHNPNERE
121 RVVYVIPFER SGAVAENPRI EELVRSAIAN IPYLTEHQRG NLTLRWETPN SLHIVLPAQR
181 NPHLASPALE RVAIVEGLLD QIAHFHRVVE GDDGIVDKID EFLEGTHLYN QENTVVMNEQ
241 IRAVALSLES EPLHRSRLIA TVNSEQAGED ESDEHAARYQ RVEETNGSPG FVMRHAITQD
301 LVDLLTRLRN EQESLRPHLI RYERILNSRV LYNIDDEEHT DTDYRANFFT VYMEHVQRVL
361 HRLSHAWHLT SDLSVYLHTP IPRRLLPNYQ QFQLLAPTEG EIILEFHALR GSTPSEATTN
421 EPSWRFLEFP PPGADVQELT SDEVRIMGMN PTIRRMQQLG IAVPIPIHTH TAMGQVNVHA
481 GPSTGHPPQM MPPRRFFPPR RNGPASMSAP PPFPGGGVSN RGTNRPEIRL GSAPNQRFSS
541 PGPVNARQVP AYQGASDTVA PTGSFIFQFL DIYSDQEGPS LEQAIVQALE QGLPSEDSPN
601 PYERLMRTLL HCSTDSNVDI AGILRSHGVQ RARKGNQRSA APSLGSMARG VISQTGGEVP
661 FMSEVISNIM RSNGLGGAVQ PYVDVIMEYG EAGPPADVNQ GQQQVLNMAM SGLPPTDDHG
721 RPPTAISYHV DVHQFEIFRH PAQPEAAAQE SQDAPAADSS NVPPHAPSTS AAAPLDSARL
781 PPFRNGVAQN RQRQRGTPSD FPFIVGSVGF PSEMHFMAPR QDIVSVDPFL SCTSRFTDAQ
841 RVIRNSHPNP SSHQSPYRRL LGDALSSDAV TNRRAVPIND YERVVLGVGS SGDIVITDEN
901 LFENFVQLAV RSALSRMAHL DQDRNSQNAR GGQRVFPGGS AIQLPGGGEI VQATVSAPVF
961 VRAEIEQHPL VHSDSATGNV RGAGETSQQL NGVAGVQSSS SIPEVEEGRA IISELANSHA
1021 TGMNTRLTTI LDSSHAPSSM LRPGNGSGIF AQLEALVLNF ATLGDVANMI SMNFSPLETH
1081 RSRFRAHVIE NQLNGNSMPS ADDLLSASTR LAALRSSIAS VVRAAGGDLE RDWNGRRVNL
1141 SSTIHNVEVA AIQQLLRAVL DRNSTDAEFC RRVQNVLRDY VRHLVALGNH SFSGTSQDDY
1201 MRIAHEFLNR ADRNVGVVDV NLRRLLHLRN CFVPRLAAAL RDQGRFPNLD EIPSRLFVWS
1261 TSNEHEMQQG SVESARQSSA FDQSCNGMSG SLADADNSNE TEPSTSRDCT FMSAQAAVAE
1321 GDAQLQAQLR SYDGNWQRSF PNFVETIERD ILSAQTNPRQ LRNPSDAYQT AYPEQARRMV
1381 VPDRGSEEDV LQSALRETLR NVFRGNVPAA VTGSMNSGAV LGAFGELMES ALQRRVEEDP
1441 EYDELLCPDA ARRFTRRP
//