LOCUS WKY06702.1 1169 aa PRT INV 31-JUL-2023
DEFINITION Nippostrongylus brasiliensis hypothetical protein protein.
ACCESSION CP130735-3527
PROTEIN_ID WKY06702.1
SOURCE Nippostrongylus brasiliensis
ORGANISM Nippostrongylus brasiliensis
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
Rhabditina; Rhabditomorpha; Strongyloidea; Heligmosomidae;
Nippostrongylus.
REFERENCE 1 (bases 1 to 50441521)
AUTHORS Schwarz,E.M., Baniya,A., Rodriguez,I.M., Lu,D., Bobardt,S.D.,
Anesko,K., Baker,L., Gouil,Q., Ritchie,M.E., Jex,A.R., Nair,M.G.
and Dillman,A.R.
TITLE A Nippostrongylus brasiliensis chromosomal reference genome and its
transcriptomics
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 50441521)
AUTHORS Schwarz,E.M., Baniya,A., Rodriguez,I.M., Lu,D., Bobardt,S.D.,
Anesko,K., Baker,L., Gouil,Q., Ritchie,M.E., Jex,A.R., Nair,M.G.
and Dillman,A.R.
TITLE Direct Submission
JOURNAL Submitted (16-JUL-2023) Molecular Biology and Genetics, Cornell
University, Biotechnology Bldg., 526 Campus Road, Ithaca, NY 14853,
USA
COMMENT ##Genome-Assembly-Data-START##
Assembly Date :: 03-JUN-2022
Assembly Method :: raven v. 1.7.0; sourmash v. MAR-2022;
racon v. 1.4.20; POLCA (in MaSuRCA) v.
4.0.8; 3d-dna v. 180419
Assembly Name :: Nippo_1.0
Genome Representation :: Full
Expected Final Version :: Yes
Genome Coverage :: 76.0x
Sequencing Technology :: Oxford Nanopore PromethION; Illumina
HiSeq; Omni-C
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Nippostrongylus brasiliensis"
/mol_type="genomic DNA"
/strain="MIMR"
/db_xref="taxon:27835"
/chromosome="IV"
/sex="pooled male and female"
/tissue_type="Whole animal"
/dev_stage="Adults"
/geo_loc_name="USA: Laboratory of Meera Nair, UC Riverside
School of Medicine, Riverside, CA"
/collection_date="2021/2022"
protein /locus_tag="Q1695_006688"
/note="NIPPO_CHRIV.G10528.T3"
intron_pos 40:0 (1/31)
intron_pos 73:0 (2/31)
intron_pos 119:2 (3/31)
intron_pos 138:2 (4/31)
intron_pos 168:0 (5/31)
intron_pos 189:1 (6/31)
intron_pos 229:0 (7/31)
intron_pos 290:0 (8/31)
intron_pos 311:0 (9/31)
intron_pos 349:0 (10/31)
intron_pos 378:0 (11/31)
intron_pos 412:0 (12/31)
intron_pos 443:0 (13/31)
intron_pos 462:2 (14/31)
intron_pos 500:0 (15/31)
intron_pos 542:1 (16/31)
intron_pos 577:2 (17/31)
intron_pos 614:0 (18/31)
intron_pos 666:0 (19/31)
intron_pos 723:2 (20/31)
intron_pos 779:0 (21/31)
intron_pos 856:0 (22/31)
intron_pos 895:0 (23/31)
intron_pos 919:0 (24/31)
intron_pos 942:1 (25/31)
intron_pos 985:0 (26/31)
intron_pos 1014:2 (27/31)
intron_pos 1040:1 (28/31)
intron_pos 1064:0 (29/31)
intron_pos 1107:0 (30/31)
intron_pos 1139:2 (31/31)
BEGIN
1 MFPAYATGTA NEKEDGEIVD DNQKFSSFDE EKILEARARK EKRAKEAKMR ERMEHQMAPR
61 YIYSDDDEVE VHVPMAIPAH HVPFSEPRVD LPSSKKKKKK KSKASKKHKN KKKRRRHTTL
121 SSSSSSSDSD EPSGSRRRNR GSSSSSSSSD DSSRERRKRK VVVPPSIEKE KWSFLGHGEE
181 RSREGSFIVY DRQYDHLLFG MDSIPKGHTT VNRTEFYSIL NGNKKMDQLF FPAPPHSTKD
241 RSYRYYGGAL RNLNEADVEN RFRKKAPPQG CEADFIPLSH VKLKDFQFLY DIEKQNEENK
301 AREELEAEVS LSTSPDMVPL EVRRRLITTR FGNDPKNLET LEEYLRINEE IFEAGRAQHF
361 GADRRALVER QLSIVDKAIA HNARSVELRI KRLEFMKEIH PTSELLLEWE KLLNAFVNNC
421 SLWEKYLDHI QYDMALYTRD ILEKAFDRCF VKLGSLLNGS FKSHKADSGT DAFLLRMYVR
481 RLTWWMECGY TNRAVASVQA CIEYYERRPH DLVNAPEKQL MEAFAKFWRS GVPRIGDREA
541 KGWAYYFCKR EVEEEPHDPE ILEREIQTQL IASLEERIAS SANDAILDWS EMECELDNIE
601 SRPRRPLREN YARENDQLHA QSELDFRDIR IVPVYPAHCG LVLLRALGVQ FPEQLDLNVF
661 HPAGVTVPPA PTFCLLDEWD LMPSSTSMFR NPCRGAIDIA LNIVYSMVKH TPCTEFVFVL
721 LETKAYQTDL LYHDAPKSVR CAKFQEYLRE VMKELEPLDF KMTREEFELA VVAYAVSVSR
781 RWVQEGGEGF CPSNPDENET QQKKKKKKKE GRLFTRSRLI ERLRNLVFND VATPLHLLGP
841 RRTQILLRML ISLIQAILVR KTNNIAGSST DRESDVELVR EAIAAFVLRK NCEKVTKTDA
901 LAALDAWKQL FRSLDRNKSL TCFESSRALC VALRIYFDYS KASHTTNQWI EECAVFLRNI
961 EPFTTEDDKG VVIEAYLDVL EHHWRSSHTG KENLVDILKR GQEECPHKSS FIRRYIDLCA
1021 GRVQSLKVHR FIASRNVRAD PTLDTIRSLS FLYLEKRKAE TLQEAGVTSS TNVSAQITRR
1081 EASRRMDPAL WRLAMEQCFD ERFFEETHVM ASAQCGWSRH LHIDRTRRFA TRQKCEEIIC
1141 LMEERGAHVF NDLDYVDVLK EVATVPSQI
//