LOCUS WKY06658.1 1831 aa PRT INV 31-JUL-2023
DEFINITION Nippostrongylus brasiliensis hypothetical protein protein.
ACCESSION CP130735-3484
PROTEIN_ID WKY06658.1
SOURCE Nippostrongylus brasiliensis
ORGANISM Nippostrongylus brasiliensis
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
Rhabditina; Rhabditomorpha; Strongyloidea; Heligmosomidae;
Nippostrongylus.
REFERENCE 1 (bases 1 to 50441521)
AUTHORS Schwarz,E.M., Baniya,A., Rodriguez,I.M., Lu,D., Bobardt,S.D.,
Anesko,K., Baker,L., Gouil,Q., Ritchie,M.E., Jex,A.R., Nair,M.G.
and Dillman,A.R.
TITLE A Nippostrongylus brasiliensis chromosomal reference genome and its
transcriptomics
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 50441521)
AUTHORS Schwarz,E.M., Baniya,A., Rodriguez,I.M., Lu,D., Bobardt,S.D.,
Anesko,K., Baker,L., Gouil,Q., Ritchie,M.E., Jex,A.R., Nair,M.G.
and Dillman,A.R.
TITLE Direct Submission
JOURNAL Submitted (16-JUL-2023) Molecular Biology and Genetics, Cornell
University, Biotechnology Bldg., 526 Campus Road, Ithaca, NY 14853,
USA
COMMENT ##Genome-Assembly-Data-START##
Assembly Date :: 03-JUN-2022
Assembly Method :: raven v. 1.7.0; sourmash v. MAR-2022;
racon v. 1.4.20; POLCA (in MaSuRCA) v.
4.0.8; 3d-dna v. 180419
Assembly Name :: Nippo_1.0
Genome Representation :: Full
Expected Final Version :: Yes
Genome Coverage :: 76.0x
Sequencing Technology :: Oxford Nanopore PromethION; Illumina
HiSeq; Omni-C
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Nippostrongylus brasiliensis"
/mol_type="genomic DNA"
/strain="MIMR"
/db_xref="taxon:27835"
/chromosome="IV"
/sex="pooled male and female"
/tissue_type="Whole animal"
/dev_stage="Adults"
/geo_loc_name="USA: Laboratory of Meera Nair, UC Riverside
School of Medicine, Riverside, CA"
/collection_date="2021/2022"
protein /locus_tag="Q1695_006668"
/note="NIPPO_CHRIV.G10508.T2"
intron_pos 18:2 (1/48)
intron_pos 42:2 (2/48)
intron_pos 87:0 (3/48)
intron_pos 128:0 (4/48)
intron_pos 166:1 (5/48)
intron_pos 196:0 (6/48)
intron_pos 243:0 (7/48)
intron_pos 276:0 (8/48)
intron_pos 298:0 (9/48)
intron_pos 347:2 (10/48)
intron_pos 384:0 (11/48)
intron_pos 407:0 (12/48)
intron_pos 429:0 (13/48)
intron_pos 471:0 (14/48)
intron_pos 493:0 (15/48)
intron_pos 530:1 (16/48)
intron_pos 571:1 (17/48)
intron_pos 609:0 (18/48)
intron_pos 638:2 (19/48)
intron_pos 668:1 (20/48)
intron_pos 697:0 (21/48)
intron_pos 735:0 (22/48)
intron_pos 800:2 (23/48)
intron_pos 833:1 (24/48)
intron_pos 864:2 (25/48)
intron_pos 917:0 (26/48)
intron_pos 974:1 (27/48)
intron_pos 1007:0 (28/48)
intron_pos 1048:0 (29/48)
intron_pos 1076:2 (30/48)
intron_pos 1109:2 (31/48)
intron_pos 1145:2 (32/48)
intron_pos 1184:0 (33/48)
intron_pos 1224:1 (34/48)
intron_pos 1272:0 (35/48)
intron_pos 1310:0 (36/48)
intron_pos 1358:1 (37/48)
intron_pos 1402:2 (38/48)
intron_pos 1444:2 (39/48)
intron_pos 1482:0 (40/48)
intron_pos 1527:0 (41/48)
intron_pos 1545:2 (42/48)
intron_pos 1573:0 (43/48)
intron_pos 1601:0 (44/48)
intron_pos 1651:2 (45/48)
intron_pos 1696:0 (46/48)
intron_pos 1749:0 (47/48)
intron_pos 1803:2 (48/48)
BEGIN
1 MRREIRKEQK RAKKELNRIY HAFGDEEKLE LELAQREILR IRQLELDQLK WNPTIKGANK
61 PRESYPFVFD VCAESGSAMI TINGMKYALP EGSTRESFRT HEEVEVPPMN RGSVGDVHHV
121 FVKDMDDLGQ LGFKGYEKLN VIQSIVFEQA YKTKENLLIC APTGAGKTNI AMLCILNTIH
181 EHRMLNGDIA KDDFKIIYIA PMKALATEMT DSFGKRLAPL GLQVRELTGD TTLSKKEISE
241 TQMLVLTPEK WDVVTRKGTS DNSLTSLVRL LIIDEVHLLH DDRGPVIETI VARTLRQVEM
301 SQTGIRIVGL SATLPNYVDV ARFLRVNPYK GLFFFDGRFR PVPLTQKFIG IKKLGGIRDT
361 QETMNEVCYD EVLSYVKKGH QVLVFVHARN ATAALAQAFR ERAAQLGHLE LFVPPTKSTR
421 GYVMAEKSVQ ASRNSKLFEF FRFGFGVHHA GLVRHDRLLM EKVFHQGHIM VLFCTATLAW
481 GVNLPAHAVV IRGTEVFDAE KGQFADLGVL DVQQIFGRAG RPQFENEGHG IIITTQNKLD
541 KYLGMLIRQA PIESQFFKRI HDNMNAEIAL GTVSNVDEAV EWLTYTYYYT RATQNPIAYG
601 LPHTVLDKDP DLRHHLTRMV TDVAVKLDQN QMIRFDSVNA FMHATDLGRI ASNFYVKCET
661 IEMLNETGLP VSLSAFMPDD MVIALISMAT EFSQLKIREE ECLDLEELIS CGCVLPLRGG
721 GLASVAGKVN VLLQSYISRT FVRSFSLASE SLYVQQNAGR LCRAIFEIVL RRGWAQAANA
781 FLTISKCIEK RVWPNQSTLR QLDDFIRIDL IEKVERRKLT ESQLLDLSAK ELGYMFSCDG
841 EKLYQAMRML PRVEVEASLR PITYTIMQVS ATITPAFVWN DRLLGKTGAQ SFWLTLENID
901 ENLIVHQEQI VINKKKVKLR EPQHLVFTIP IRDHQLSNVF QLRLASDYYL VDDTVVALSM
961 HNCILPKSYK AHTDLLPLDP LPVKTLRNEK FESIYNFSYF NPIQTQVFHC LYNTDESALI
1021 GAPTGSGKTL CAELAMFRLL QNNPGKKCVY IAPLKALVRE RVEDWRAKFE AKMGYKVVEV
1081 SGDYTPDISV LNAAPILITT PEKWDGITRS WATREYVRQV NLIIIDEIHL LGVDRGAVLE
1141 AIITRLKILT RRSCVRKSPA RLLGLSTALA NAGDVAEWLG IRDEGLFNFR PSVRPVPIDV
1201 HIQGFPGQHY CPRMALMNKP AFKAIITYSP LKPVLVFVAS RRQTRLTAMA FISHLVAESD
1261 PRQWLHVDMA ELEVLLEHVK DENLKLTLPF GIGMHHAGLS MHERALVEEL FVQKKIQVLI
1321 ATATLAWGIN MPAHLVIVKG TEYFDGKTCK YVDYPVTDVL QMMGRAGRPQ FDTSAVAVIY
1381 VQDVKKTFYK RFLYEPFPVE SSLLPVLANH VNAEINAGTI SSKQNVMEYI AGTYFYRRLF
1441 ANPNYYGLED LSEKCLISFM VGVVDQCVAD LIDSKCLIID EETGDLRCSP YGRIASIYYL
1501 RHETMKFLLE QLGSADTIED LLKTLSHVPE YAEIPVRHNE DVINTQLQRK LRIRFSTSVM
1561 DSSFTKAHLL FQAHFSRTEI PTDYRTDLRS VLDQCVRILQ AMRDVCQLNG WLSTALQITI
1621 LQQMCHSGRW YDDHPLLCLP HLSIYDAERI GERSSIPLLQ NEFDVEKAPG TDAVEKRAKK
1681 TFLDNTTLEE TEIKQVVRAL CRWPILSVDG ILLVKGAKEM RVGDDWLQLE RNTRYKLQFQ
1741 FNMLGPNRFN TEAFLPQWSK EKTAGWIVIV GEKDTDKLIT ISHVPAVQGD RTVRIDFVAP
1801 DKRGRCHLSV FILSDCYLGI DQELQIRADL S
//