LOCUS WKY06499.1 2771 aa PRT INV 31-JUL-2023
DEFINITION Nippostrongylus brasiliensis hypothetical protein protein.
ACCESSION CP130735-3325
PROTEIN_ID WKY06499.1
SOURCE Nippostrongylus brasiliensis
ORGANISM Nippostrongylus brasiliensis
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
Rhabditina; Rhabditomorpha; Strongyloidea; Heligmosomidae;
Nippostrongylus.
REFERENCE 1 (bases 1 to 50441521)
AUTHORS Schwarz,E.M., Baniya,A., Rodriguez,I.M., Lu,D., Bobardt,S.D.,
Anesko,K., Baker,L., Gouil,Q., Ritchie,M.E., Jex,A.R., Nair,M.G.
and Dillman,A.R.
TITLE A Nippostrongylus brasiliensis chromosomal reference genome and its
transcriptomics
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 50441521)
AUTHORS Schwarz,E.M., Baniya,A., Rodriguez,I.M., Lu,D., Bobardt,S.D.,
Anesko,K., Baker,L., Gouil,Q., Ritchie,M.E., Jex,A.R., Nair,M.G.
and Dillman,A.R.
TITLE Direct Submission
JOURNAL Submitted (16-JUL-2023) Molecular Biology and Genetics, Cornell
University, Biotechnology Bldg., 526 Campus Road, Ithaca, NY 14853,
USA
COMMENT ##Genome-Assembly-Data-START##
Assembly Date :: 03-JUN-2022
Assembly Method :: raven v. 1.7.0; sourmash v. MAR-2022;
racon v. 1.4.20; POLCA (in MaSuRCA) v.
4.0.8; 3d-dna v. 180419
Assembly Name :: Nippo_1.0
Genome Representation :: Full
Expected Final Version :: Yes
Genome Coverage :: 76.0x
Sequencing Technology :: Oxford Nanopore PromethION; Illumina
HiSeq; Omni-C
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Nippostrongylus brasiliensis"
/mol_type="genomic DNA"
/strain="MIMR"
/db_xref="taxon:27835"
/chromosome="IV"
/sex="pooled male and female"
/tissue_type="Whole animal"
/dev_stage="Adults"
/geo_loc_name="USA: Laboratory of Meera Nair, UC Riverside
School of Medicine, Riverside, CA"
/collection_date="2021/2022"
protein /locus_tag="Q1695_006581"
/note="NIPPO_CHRIV.G10421.T1"
intron_pos 29:1 (1/51)
intron_pos 79:0 (2/51)
intron_pos 154:0 (3/51)
intron_pos 183:0 (4/51)
intron_pos 235:0 (5/51)
intron_pos 267:0 (6/51)
intron_pos 350:0 (7/51)
intron_pos 395:0 (8/51)
intron_pos 425:2 (9/51)
intron_pos 451:0 (10/51)
intron_pos 503:2 (11/51)
intron_pos 653:0 (12/51)
intron_pos 694:0 (13/51)
intron_pos 734:0 (14/51)
intron_pos 778:0 (15/51)
intron_pos 835:0 (16/51)
intron_pos 909:1 (17/51)
intron_pos 968:0 (18/51)
intron_pos 1024:0 (19/51)
intron_pos 1057:0 (20/51)
intron_pos 1094:2 (21/51)
intron_pos 1125:0 (22/51)
intron_pos 1174:0 (23/51)
intron_pos 1217:0 (24/51)
intron_pos 1255:0 (25/51)
intron_pos 1292:0 (26/51)
intron_pos 1340:0 (27/51)
intron_pos 1409:1 (28/51)
intron_pos 1450:0 (29/51)
intron_pos 1480:1 (30/51)
intron_pos 1524:0 (31/51)
intron_pos 1583:0 (32/51)
intron_pos 1671:2 (33/51)
intron_pos 1730:0 (34/51)
intron_pos 1842:1 (35/51)
intron_pos 1915:0 (36/51)
intron_pos 2076:0 (37/51)
intron_pos 2154:1 (38/51)
intron_pos 2191:0 (39/51)
intron_pos 2251:2 (40/51)
intron_pos 2294:0 (41/51)
intron_pos 2364:1 (42/51)
intron_pos 2415:1 (43/51)
intron_pos 2468:0 (44/51)
intron_pos 2531:0 (45/51)
intron_pos 2588:2 (46/51)
intron_pos 2611:2 (47/51)
intron_pos 2671:2 (48/51)
intron_pos 2719:2 (49/51)
intron_pos 2750:2 (50/51)
intron_pos 2765:0 (51/51)
BEGIN
1 MTPTAGVVLV PLLLLVYIPA VAAGESAQPC FFPESDVRPF FYEVGVDATP GKLIMESEVD
61 PPDAHIILAS VRSERPVGIN FTEYFELRSR NSGRFELRTT GSLSLPSDVD QLTLFATVVC
121 NDEAFPLFTI RLRSNESDSP QFYNAPYHIE VNESLSVGDT VVTPVVVVDW DSENYPPRLH
181 LEDSDSPFKV VTEPHGEQSV IGTNKTSQRQ PTLVLLKLVK PIKRLPITLK LVAENSLDRT
241 SETSIHIHAK PKRDEKSLKV QASKTLKSLP IALEEDDEST TPVESSSAED PDNPKPTSTV
301 NEADSKNRTS ASNEQLATRF EKCDIRLTMP ENSDVGTLVT TLNVLNRKKW TMIDVLNPDG
361 TFEIRQNTGE VFIRDNRIMD RELFTNVELV AEIHGSSHMT PCSRVRVNVE LLDVNDNRPA
421 FEQEKYVFVF PQPVLVNGAI GIVRARDIDE GEAGRVSYRL LNDSVPFMIR HKGKDGEIVA
481 TSSLDDSEYT LIVEARDNAP PFLRSQVPVT IHLPQSQPTT TATTRHLSGV LTVTVNSEFD
541 QSIPAITTLE PASTFVTEPS STVHITSPSA SRRTDSFPAT SSRSTTSELT ASAPFTTDQP
601 TAFKKVAVHP TLVTNEKLEN ELNTSTNTND LEQDDDYTSE EETEEETSTN QGPPFDFVQP
661 TYYYEVFGTP RDGDVLGRVE ARPHAQFYGI DRKMSGFFKV DPDLGEIGVG REVDRLVAGN
721 HSFDISATNG LRTAQTTVTV FVNPKRNRTD AIPRFERDRY VFSINENTPP SVIGVVRAYH
781 VALSQNEATL RYELYPRTSG AAAAALPFRV NANSGEVTSE TALDHEASKN YEFKVRACLS
841 VNPNSCGYTS VVVIVVDLND NAPRFSASEY QISLPSDLPV GSDVITLLAT DSDSGINGDV
901 NYAINPPSAV FGIDYHTGVV QTFAPVTESR YELKVEAFDH GDPKQTSVAR LTIDVHGTNP
961 SAPVFDKKRY DVSLKSPIRA GAVVAQLHAK DPDPGLEGQI AYKFDRTDGK QMTEQSKFSI
1021 NEQTGVVSAL TPLTAQDGPF ELVVVAEDQS TVFKRKAKAA LHIEIVGGTQ LHFLPLPSTI
1081 YISTEKAVGS VVLRASAFTS SSSSVHFRIL ENEAQFVMDG DLLRVATHLV PGETHLTIRA
1141 ESDGIYSDHN LQVVVMYDRD KYPVFPQLTY DVDVPIDSHF PLVLQRFDAR LLNGTLRYRF
1201 FPDGTAPEGL EIDAITGELR ATSSYARTPS NHETQFVVVR AVNVDFPKFY SDVGVAVSLV
1261 SSTTVRFPHS IYRLQISENV PVGTALFPPI EALPSHPSVV YSIEPAFPLS ILQNGTLVVN
1321 SPVDLELLPV DQADNLHFIV TASMDGVQSV AKLQLKITDV NEFSPRFERS TYSATVSQNA
1381 RPGEIIVKVK AEDADRTDGS HLLYRVVGGS GKDMVFIRED GTLVLGEISL KTSDNFDVIV
1441 EAVDRSGAKD STRVVVTLET SKADAPHFVA PSLEWNITEG STKEFLDVTA SDSSSEPNGE
1501 IDYRIVEGAL DNRFVIEKTP SGRAILKLLS PFDYETTPFH KLTVEAADHS NPPRTATVDV
1561 NIAVVNANDN PPIFRRINIE QEVQSDLPIG YPILTLSVGD ADHDLLSFSL SGDPACSSLS
1621 VDPLGIVSFT KAVSKRKTGA ITCVVTATDG VHTSNATLRL NVVDDQDQTT STPPVENSAP
1681 RFAKEVYTVT LKPQTTHLLN VTAVDPDGDV VLYSIEPPEF RNLFAVDAKG ELTVRAHMSE
1741 LKQSMYSFLV VAEDRGKPIM SSFTNIRVKL PENFITAATD NFLEFRTSTE VTRAELPPTP
1801 DRPSQGEATT EAFGSSTASS SSPSTTATSE QISSSSIAVR KEVHFNKRKY SYTIRSNANV
1861 GTYVGRVEVD DKKGVQLSFE KNQLFSIDSK GRIHTSAVFD GPMKIEDKIL ATRQGTTVGR
1921 ADFSVFVLEP EVNNETSPVS ITSGTVGAVV SPQSTSPTPT EISASATSAP ITQSSTQIED
1981 ITITDSTPFS TTSEASREFS FGRSSYFAFV PEGQYTNGIR VSVKPEPLSV NRNTNVRYEI
2041 DESTGRVPFF LTGDGQLIIF DVDRETQANY VFPIKASSAE FGVARAMVNV TILDVNDNYP
2101 QFDMAPSTVG LYSDVPVGTP IVHFSAHDRD ADNFGTVTYG IEESDTPFDV DPKDGTLFVA
2161 KPLQTNLVNE FSINVIARDD GRPSLKSRQQ INISVFDPAI ESPVFPDELP EKVVFVEMQP
2221 GSEVATAIAG PTINTRPHQE KILYGLVDDH NGLFKIEDGG RIILNRRTNY GERNQFVELN
2281 ITAENSHGRS WVPLKIFIEP ESVTESTTDG HGPTTTASDC YFPTKIHNAA VLENRSERTR
2341 VAKVTSTCEK DGRPFVYSMS TLTDSFELNA TSGEIFAIRP LDREKRTFHM LFVDVSSDKK
2401 EDRGRVARSN PIVDQAKAKL TEFQTLVVVR VLDENDNPPT FVHVAGDELV ATVDWQSRLF
2461 SAVLKLEATD VDEHSVLTFS LTGRDHEYFL VNSTSGLVIL AKTIADYTGE SLRFTAIVSD
2521 GAHRKELPVI VYVISPSSAL LQLTSELPHS QLDQYVTERT LNELTGLDNR LLAKQPYVDH
2581 QGHADPSRSH LFVYAIDRKT KVPYQKEKLL AILENHAAAL LSSPSKISNI SLLSTSQTAV
2641 STFDFILAVV VVILLLLLFA ACCILSSYCK RKRAVATSDR EYMVSSKAGP RPYDVEAFSR
2701 TTAQRVLSAR PLPEPFTNQI EVAVSPIFVD QPAVTTNKDD TTLEFFNSVR ERPSLLQSAL
2761 ARQKVNSSTQ K
//