LOCUS WKY06410.1 1238 aa PRT INV 31-JUL-2023
DEFINITION Nippostrongylus brasiliensis hypothetical protein protein.
ACCESSION CP130735-3238
PROTEIN_ID WKY06410.1
SOURCE Nippostrongylus brasiliensis
ORGANISM Nippostrongylus brasiliensis
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
Rhabditina; Rhabditomorpha; Strongyloidea; Heligmosomidae;
Nippostrongylus.
REFERENCE 1 (bases 1 to 50441521)
AUTHORS Schwarz,E.M., Baniya,A., Rodriguez,I.M., Lu,D., Bobardt,S.D.,
Anesko,K., Baker,L., Gouil,Q., Ritchie,M.E., Jex,A.R., Nair,M.G.
and Dillman,A.R.
TITLE A Nippostrongylus brasiliensis chromosomal reference genome and its
transcriptomics
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 50441521)
AUTHORS Schwarz,E.M., Baniya,A., Rodriguez,I.M., Lu,D., Bobardt,S.D.,
Anesko,K., Baker,L., Gouil,Q., Ritchie,M.E., Jex,A.R., Nair,M.G.
and Dillman,A.R.
TITLE Direct Submission
JOURNAL Submitted (16-JUL-2023) Molecular Biology and Genetics, Cornell
University, Biotechnology Bldg., 526 Campus Road, Ithaca, NY 14853,
USA
COMMENT ##Genome-Assembly-Data-START##
Assembly Date :: 03-JUN-2022
Assembly Method :: raven v. 1.7.0; sourmash v. MAR-2022;
racon v. 1.4.20; POLCA (in MaSuRCA) v.
4.0.8; 3d-dna v. 180419
Assembly Name :: Nippo_1.0
Genome Representation :: Full
Expected Final Version :: Yes
Genome Coverage :: 76.0x
Sequencing Technology :: Oxford Nanopore PromethION; Illumina
HiSeq; Omni-C
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Nippostrongylus brasiliensis"
/mol_type="genomic DNA"
/strain="MIMR"
/db_xref="taxon:27835"
/chromosome="IV"
/sex="pooled male and female"
/tissue_type="Whole animal"
/dev_stage="Adults"
/geo_loc_name="USA: Laboratory of Meera Nair, UC Riverside
School of Medicine, Riverside, CA"
/collection_date="2021/2022"
protein /locus_tag="Q1695_006532"
/note="NIPPO_CHRIV.G10372.T1"
intron_pos 24:2 (1/36)
intron_pos 52:0 (2/36)
intron_pos 88:0 (3/36)
intron_pos 145:2 (4/36)
intron_pos 177:1 (5/36)
intron_pos 220:1 (6/36)
intron_pos 242:2 (7/36)
intron_pos 293:0 (8/36)
intron_pos 319:0 (9/36)
intron_pos 349:0 (10/36)
intron_pos 388:0 (11/36)
intron_pos 431:0 (12/36)
intron_pos 463:0 (13/36)
intron_pos 481:0 (14/36)
intron_pos 492:0 (15/36)
intron_pos 541:0 (16/36)
intron_pos 566:0 (17/36)
intron_pos 592:0 (18/36)
intron_pos 623:0 (19/36)
intron_pos 668:2 (20/36)
intron_pos 709:2 (21/36)
intron_pos 738:1 (22/36)
intron_pos 777:2 (23/36)
intron_pos 826:2 (24/36)
intron_pos 849:2 (25/36)
intron_pos 886:1 (26/36)
intron_pos 923:1 (27/36)
intron_pos 947:0 (28/36)
intron_pos 977:0 (29/36)
intron_pos 1011:2 (30/36)
intron_pos 1036:0 (31/36)
intron_pos 1073:1 (32/36)
intron_pos 1099:0 (33/36)
intron_pos 1128:2 (34/36)
intron_pos 1168:0 (35/36)
intron_pos 1206:0 (36/36)
BEGIN
1 MRSIVLLLFA AHCSIIGEAF NKNSIEECAR VLSENLLDTF KRVTKSDQIQ QLYDQFVEPE
61 QFDPRDELKR SKTAVENYLK RRADFAYKAK VSLEVREVVN SSDEEVNDPN SKDFIRFMSA
121 KQGNDATTIY VHDHSLRRTK VNETRNFSLE ANANFYNLPT SSIASAVHIP TPLYDRNPEL
181 LRKIEWSEID EIYRTHREET RDLAFQLFCS ESGYMRFFPA ASWFWDNHIE HLDLFDCRNT
241 QWYINAATNS KNVLIMLDMS GSMLGQRYEI AKQTTEAILE TLSHNDYFNI MPFSKTPYFL
301 DDCNGKNGLL QATMRNKKLL RNKMNNVTSE GKAEYEKALP HAFTTLLNIS SHHGRSDQGC
361 ENVIMLITDG APNVYKEIFD LYNKDKKVRF FSFLIGEEAI DFEQVKTMAC TNRGYMVHVQ
421 NMADVEDKVQ HYIRTMSRPI GQNAADIQVD DALWSGVYRE RLYLPRPETF AEPVPITNQS
481 YAIMNKMAAR RKIRLQKTEA RGRMFVTTVS FPVIVNRTFM GVAAVNTPLT ELNQQAHPSN
541 IGPRSYFFML DQNGFIMFHP QLRPIDPATK SHKQNYNNMD LLELEVPQTQ QIRLSQDKED
601 ISELYCDQGT TFAECVGQIR DIVRKMVMNC DNSDPQLLDV LFATEMLDRV YPQTNVYFSE
661 CIQGANFVLG LAVAKGDDYR WRSKSRQYDY SRVQLSWMGD KQWKVHPHWR YCLLNDTDTN
721 ITKEEAFVIY ATQMKHSGKL PALCRPREQL VNKLLLDLEA TSALQDSWDL QWQFLKDNLI
781 HLVFFATPSG LIRFYNQTLD DYDYEDPNWS IFDHIGAMLS IEHVQELFQS KLRYRKRNFS
841 ATVDQHFRQS YNHFITDLNR KSVDDTYYRR SVRMKDHIVF DVSNKSKIWY KSETQLTAYG
901 LNENLTMLAQ GTKAIYLGNA LLGVAGFEFA YDYFVNLMGE HGCAPSDDRR WCVLLDEHGY
961 VFYSNQRDIS YEDYLEDPVH KGKHISQWFG SINRVSQRVM SLLVEKRFYI KLKYTDHQAM
1021 CKEKKVVVMS SSSLRPFHSF YRWLMSSIYR LLLLAKQYPL LHLFHSFAKP VESYTASFHE
1081 GTDGFPCSKQ SYFYLANGDG RSRPQSTSLV DMNRSDRPCT LNSAKCSVKM QASFVEGTNL
1141 VMVWIIQDKT SDNCYDETQC PKVEPSEVPF GFERVPPVDP SEKCNGVHHK KPSRSRSMCY
1201 NNLREVGKFP CSFCPTTSLS FSLLLCLLMT LLAVFDSH
//