LOCUS WKY06026.1 2188 aa PRT INV 31-JUL-2023
DEFINITION Nippostrongylus brasiliensis hypothetical protein protein.
ACCESSION CP130735-2850
PROTEIN_ID WKY06026.1
SOURCE Nippostrongylus brasiliensis
ORGANISM Nippostrongylus brasiliensis
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
Rhabditina; Rhabditomorpha; Strongyloidea; Heligmosomidae;
Nippostrongylus.
REFERENCE 1 (bases 1 to 50441521)
AUTHORS Schwarz,E.M., Baniya,A., Rodriguez,I.M., Lu,D., Bobardt,S.D.,
Anesko,K., Baker,L., Gouil,Q., Ritchie,M.E., Jex,A.R., Nair,M.G.
and Dillman,A.R.
TITLE A Nippostrongylus brasiliensis chromosomal reference genome and its
transcriptomics
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 50441521)
AUTHORS Schwarz,E.M., Baniya,A., Rodriguez,I.M., Lu,D., Bobardt,S.D.,
Anesko,K., Baker,L., Gouil,Q., Ritchie,M.E., Jex,A.R., Nair,M.G.
and Dillman,A.R.
TITLE Direct Submission
JOURNAL Submitted (16-JUL-2023) Molecular Biology and Genetics, Cornell
University, Biotechnology Bldg., 526 Campus Road, Ithaca, NY 14853,
USA
COMMENT ##Genome-Assembly-Data-START##
Assembly Date :: 03-JUN-2022
Assembly Method :: raven v. 1.7.0; sourmash v. MAR-2022;
racon v. 1.4.20; POLCA (in MaSuRCA) v.
4.0.8; 3d-dna v. 180419
Assembly Name :: Nippo_1.0
Genome Representation :: Full
Expected Final Version :: Yes
Genome Coverage :: 76.0x
Sequencing Technology :: Oxford Nanopore PromethION; Illumina
HiSeq; Omni-C
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Nippostrongylus brasiliensis"
/mol_type="genomic DNA"
/strain="MIMR"
/db_xref="taxon:27835"
/chromosome="IV"
/sex="pooled male and female"
/tissue_type="Whole animal"
/dev_stage="Adults"
/geo_loc_name="USA: Laboratory of Meera Nair, UC Riverside
School of Medicine, Riverside, CA"
/collection_date="2021/2022"
protein /locus_tag="Q1695_006321"
/note="NIPPO_CHRIV.G10161.T1"
intron_pos 17:0 (1/53)
intron_pos 68:2 (2/53)
intron_pos 103:1 (3/53)
intron_pos 145:0 (4/53)
intron_pos 175:1 (5/53)
intron_pos 208:1 (6/53)
intron_pos 255:0 (7/53)
intron_pos 283:1 (8/53)
intron_pos 326:1 (9/53)
intron_pos 374:0 (10/53)
intron_pos 400:2 (11/53)
intron_pos 440:1 (12/53)
intron_pos 500:0 (13/53)
intron_pos 555:1 (14/53)
intron_pos 578:0 (15/53)
intron_pos 616:1 (16/53)
intron_pos 677:1 (17/53)
intron_pos 738:1 (18/53)
intron_pos 780:0 (19/53)
intron_pos 834:1 (20/53)
intron_pos 888:2 (21/53)
intron_pos 922:0 (22/53)
intron_pos 962:0 (23/53)
intron_pos 998:0 (24/53)
intron_pos 1031:2 (25/53)
intron_pos 1075:0 (26/53)
intron_pos 1098:1 (27/53)
intron_pos 1138:1 (28/53)
intron_pos 1194:0 (29/53)
intron_pos 1236:1 (30/53)
intron_pos 1269:1 (31/53)
intron_pos 1320:0 (32/53)
intron_pos 1343:2 (33/53)
intron_pos 1386:0 (34/53)
intron_pos 1447:0 (35/53)
intron_pos 1499:0 (36/53)
intron_pos 1543:1 (37/53)
intron_pos 1586:0 (38/53)
intron_pos 1625:1 (39/53)
intron_pos 1668:0 (40/53)
intron_pos 1692:1 (41/53)
intron_pos 1719:0 (42/53)
intron_pos 1761:0 (43/53)
intron_pos 1796:1 (44/53)
intron_pos 1826:2 (45/53)
intron_pos 1852:1 (46/53)
intron_pos 1904:1 (47/53)
intron_pos 1934:1 (48/53)
intron_pos 1992:2 (49/53)
intron_pos 2027:0 (50/53)
intron_pos 2081:1 (51/53)
intron_pos 2119:2 (52/53)
intron_pos 2172:1 (53/53)
BEGIN
1 MLPRGRTAIL CIALLLPPLC STNESSPLSV LSDVEQQCPE GWSRLGQKCY KAYHSEKSWP
61 LATQTCSRYG AHLARIETPR ENKFIASLLS RPGRSTQHEA WIGLTSQQQA DDVVFVWSDG
121 VPASRYVGFW KESEPNYKDG SCAMGTLSKS DLEWSLERCN ILRPFICEIP ACVKGSFFCA
181 SGGCVPEARQ CNGVDDCGDL SDELNCPASH ADVACLQYDK GESGKFSTPN YPSTYKANAN
241 CRWVIEAPIN SRIQLTFDVF ETEEFVDMVI VFDGGPAENS TTVLATLSGT RSDKLTLTSS
301 TNMMIVRFRS DAGVQARGFQ AHWRAVPFSC GGVLTAQAFG QTFSSPLYPS GYPAGTECVW
361 TIQAPKSQLI TLSIEDVSLS SDDTLILYDG ASPSSQILTR LSGNTSTAEY LVTTQNNVFV
421 YFLTSVQGQG RGFSIGYKRG CDVTLRQSWG TLLSPGSTKV PYPPGMQCTY TMELPDRFSD
481 QGLSIHFNRF DVAADDHVKV FEGSTKGRAL HEGAGFNSDQ RPPAQLLSRL GRAQIVMQSN
541 AIRQAMGFNV TFSLNCPALS TPPLVSLSTR SSTYGTKVIV SCPPGFEFAS GRGRSFDVHC
601 LLGGKWTETA LPNCQPVYCL AVPQIANGFA ESATNVSFGG VAKYSCYEGF AFPTGNSIEE
661 IHCGIDGNWT PAPSCRAAMC PALLPFANGD RRLEFGDGTG YGTVFRFQCR PGYRREGAAT
721 LLCKSDGQWS FEQPKCIKLT CSSLPRIANG RLSLPQPFQF GDAARVHCDP GFRADGPEEV
781 KCLANQSLSI VPSCRDVDEC AEGTAQCQDT STQCINLPGG YTCQCLSGFQ PQLVCPSPSV
841 LTPSNVATSS QPVLPAVLST TGWCANESDT LKSVTMHFVV PKVIEKIRFG KTPKGEVTSV
901 KIRYSEEEGR PLRELAVDGK SEFAVNSASS DGGEVFDLPY SIESRILEIS VASFKSEACM
961 KIELFGCQKS SCADINECMK DNGYCDQICV NKQGSYKCAC QEGYDLFTED GQGGVQLKEG
1021 ETGEHPLDVI KFNKTCIPRS CPPVHSPDNG KLLSTSKKFN YPMVVQFQCD FGYQMMGPDF
1081 IQCLSDGTWN GTIPFCLPAT CQGLKNNSAV GLFVSPENST IAYGQNVSIV CTQQNRPARV
1141 SPLASFRECV FDPKPDGREY WLSGPAADCP FVDCGPPPVL AGAVYEGDHD TYKVGSTLTF
1201 TCRPPYSLVG KSSMGDKSVR CGVDASWDLG DLRCEGPVCV DPGFPDDGSI ELESVEEGAV
1261 AKFSCNRKGY RPFPSASIQC ALGAACVLSE DVGISSGFIP DGAFADNSDS VNWGYEPHKA
1321 RLSSTGWCGS KDAFIFLSVD LQRIYTLTTL RMAGVAGSGY LRGHVTKMQL FYKTQFSQNY
1381 DTYPVEFETP SGNHNAMHQF ELSPPLRARY ILLGVAEYEG NPCVRFDLLG CLAPMTASHE
1441 IPAHLQVGWN GSVPQCMDAE PPSFQNCPQN PIFAETDENG QIKPIRYEEP RAEDNSGRIT
1501 YMRVEPVGFT SGRFITSDVN VVYTAFDDAG NMAECVVKLR IPDTIAPVMK CPDSYSLSAY
1561 EPKMRAVFNR TTVPMVIQDV SNITEVTFNP PEALLEPGDF VEVEVTATDA LGNRNQCKFQ
1621 VAYMPEQCSP ESLSSAEHVV KTCSKDGDIT SCKIGCESGY QFVDEKKVKK EFTCESGHWS
1681 PSGVAPACVP ISREPARYEL NVAISYPSTS PVSDSCLKGY VALAAASFDS LDEVLSQRCS
1741 SSVQVFVRFL DAKFTNDNGV INGNYTIQIL PTVLQNVFYD LCGLTLRTIF DLRIPGATTP
1801 IRNLLSLNGE SIPSQGIGCP QLTASKSAIS QGFGCADGEV LRQGDDQLPE CLPCPVGSVN
1861 VNNTCVRCPL GSYQDDAGQL ACKACPDGTF TQFEGAHSQK SCLAVCGNGM YSQSGLVPCQ
1921 LCPRHTFSGP PVAGSFKKCT PCESGTYTAR LGSAGPSHCK KPCQPGTFSF TGLEPCSLCP
1981 LHHYQPALGQ QRCIQCSNHT ATSSEGQSAE SACEAVDCAA KQCENKAECV VRDHRAVCEC
2041 RPGFVGERCE SIEPVCDSSP CFNGGSCETI AGTFRCICPQ NFTGARCQFG MDECIGVACP
2101 NGGVCHDLPG VGTTKCLCRT GFSGPKCAEI EDICSSANPC RNGANCIPSQ LGRFKCKCLP
2161 GWEGPTCEIN IGKMVLRKDL QRMEWNVV
//