LOCUS WKY05996.1 1171 aa PRT INV 31-JUL-2023
DEFINITION Nippostrongylus brasiliensis hypothetical protein protein.
ACCESSION CP130735-2823
PROTEIN_ID WKY05996.1
SOURCE Nippostrongylus brasiliensis
ORGANISM Nippostrongylus brasiliensis
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
Rhabditina; Rhabditomorpha; Strongyloidea; Heligmosomidae;
Nippostrongylus.
REFERENCE 1 (bases 1 to 50441521)
AUTHORS Schwarz,E.M., Baniya,A., Rodriguez,I.M., Lu,D., Bobardt,S.D.,
Anesko,K., Baker,L., Gouil,Q., Ritchie,M.E., Jex,A.R., Nair,M.G.
and Dillman,A.R.
TITLE A Nippostrongylus brasiliensis chromosomal reference genome and its
transcriptomics
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 50441521)
AUTHORS Schwarz,E.M., Baniya,A., Rodriguez,I.M., Lu,D., Bobardt,S.D.,
Anesko,K., Baker,L., Gouil,Q., Ritchie,M.E., Jex,A.R., Nair,M.G.
and Dillman,A.R.
TITLE Direct Submission
JOURNAL Submitted (16-JUL-2023) Molecular Biology and Genetics, Cornell
University, Biotechnology Bldg., 526 Campus Road, Ithaca, NY 14853,
USA
COMMENT ##Genome-Assembly-Data-START##
Assembly Date :: 03-JUN-2022
Assembly Method :: raven v. 1.7.0; sourmash v. MAR-2022;
racon v. 1.4.20; POLCA (in MaSuRCA) v.
4.0.8; 3d-dna v. 180419
Assembly Name :: Nippo_1.0
Genome Representation :: Full
Expected Final Version :: Yes
Genome Coverage :: 76.0x
Sequencing Technology :: Oxford Nanopore PromethION; Illumina
HiSeq; Omni-C
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Nippostrongylus brasiliensis"
/mol_type="genomic DNA"
/strain="MIMR"
/db_xref="taxon:27835"
/chromosome="IV"
/sex="pooled male and female"
/tissue_type="Whole animal"
/dev_stage="Adults"
/geo_loc_name="USA: Laboratory of Meera Nair, UC Riverside
School of Medicine, Riverside, CA"
/collection_date="2021/2022"
protein /locus_tag="Q1695_006305"
/note="NIPPO_CHRIV.G10145.T4"
intron_pos 38:2 (1/28)
intron_pos 88:1 (2/28)
intron_pos 124:0 (3/28)
intron_pos 151:0 (4/28)
intron_pos 214:0 (5/28)
intron_pos 251:2 (6/28)
intron_pos 295:0 (7/28)
intron_pos 319:0 (8/28)
intron_pos 355:0 (9/28)
intron_pos 398:1 (10/28)
intron_pos 421:0 (11/28)
intron_pos 450:1 (12/28)
intron_pos 494:0 (13/28)
intron_pos 517:0 (14/28)
intron_pos 547:0 (15/28)
intron_pos 584:1 (16/28)
intron_pos 635:1 (17/28)
intron_pos 667:0 (18/28)
intron_pos 762:0 (19/28)
intron_pos 806:0 (20/28)
intron_pos 843:0 (21/28)
intron_pos 883:0 (22/28)
intron_pos 940:2 (23/28)
intron_pos 984:2 (24/28)
intron_pos 1017:1 (25/28)
intron_pos 1053:0 (26/28)
intron_pos 1096:0 (27/28)
intron_pos 1125:0 (28/28)
BEGIN
1 MAELNWRDQS TLEMESDISD IQSDRGDGDT SATMMGDMSP NKSILEHENR TPIASRGLEE
61 PWAEVPAGRL SLSQPELPSH PTPPARLNMS TGNLSSGTKP PRPPLSKTLE ENKELKKQIV
121 LLKSQLNVEK YKVTELTSLQ KREVKDILEE YYSLQLAKYD VDEERQRIVE ERRQFKLELD
181 AAEVHAQTQI EDLQRKLAKA EKAHTSAVHQ IEDQKEKICA LEAELARLSE LPSMALKDDD
241 SDWTLQSEGD IIAEQLRKQL NSIERENEKL RKANEEQKKL LEEIAHSDAT SESKKIDQLE
301 TRLREEEEER NKTSSALVTY MSRCHSLEKK IRNANLSCTN VSFTTKNKTE VLRVVESVRG
361 LLVSLCKQNK DLRKECAALL GVNDGDSPNS TAERPTAEKS IHDASTFDKS RLLAEDLEKK
421 QQEIFDRLKT LAENVDMFDN SVLGILQDIE SEADVVGEDR QAAGVVVAEV DNQVQFERSL
481 MRSDPHTTAN LSMMNASIVE LMNRSLNTSK DVAGLKDKLL SLRGVTQQMF ENLRSSGVLF
541 EDILEVLGSG TEEMRNLAAR IRAMKLDWQN AMDEKHVFMG VIEETVHSVS KLQMELSAWE
601 QSLNETSFRL DLSMAHTATT QCYSAPPVQI DLEQDKQIHD DNLAELRTLI SAKEEEIKQL
661 HCAVEEAVES RNLALSSADD LRSEINEMET RLLAVMEERD QFKCAAEASE AEHRRAHAAK
721 EDSQREVGRL RKEMEVTVRK LSMKDALVTD VEAKLNAAME ECATLKEDIA GREFKLQTLS
781 AALDEEQERR QKENSAWKED LESAKETSTA LYRDLEKIRD ELHTKEEAVR YLQDKLRISE
841 ENNVRMAEVI SGYVDEGHRE ASAGDTRTKA AAEVQTTRQF AKVKSREAQT DMTREFLAQM
901 ECDAVSFTSE LKRLRSAHME LRDAIAQLVV KDVEPLPLQL DVATVEKSCK ELSRYIHHER
961 RRREKQATEI ADTTSKIEQL RKKGTLWFCS AFDDIGGGSS KSISANEQGD GVLNDRRYDD
1021 PMRQTLFLMT SMAMELVKKI RQLSALYSAG KKINFTECIE MGRRLRNELN DRLLIVRSDE
1081 ENESKKHCVP DLIHMVKILE RDNRSLHECL KSLKAEYEAL EKKNSGDPEL AERIASQLRS
1141 IHAVMGEFKR NYGILQDTSN TANAKRDAPA Q
//