LOCUS WKY05921.1 1142 aa PRT INV 31-JUL-2023
DEFINITION Nippostrongylus brasiliensis hypothetical protein protein.
ACCESSION CP130735-2746
PROTEIN_ID WKY05921.1
SOURCE Nippostrongylus brasiliensis
ORGANISM Nippostrongylus brasiliensis
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
Rhabditina; Rhabditomorpha; Strongyloidea; Heligmosomidae;
Nippostrongylus.
REFERENCE 1 (bases 1 to 50441521)
AUTHORS Schwarz,E.M., Baniya,A., Rodriguez,I.M., Lu,D., Bobardt,S.D.,
Anesko,K., Baker,L., Gouil,Q., Ritchie,M.E., Jex,A.R., Nair,M.G.
and Dillman,A.R.
TITLE A Nippostrongylus brasiliensis chromosomal reference genome and its
transcriptomics
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 50441521)
AUTHORS Schwarz,E.M., Baniya,A., Rodriguez,I.M., Lu,D., Bobardt,S.D.,
Anesko,K., Baker,L., Gouil,Q., Ritchie,M.E., Jex,A.R., Nair,M.G.
and Dillman,A.R.
TITLE Direct Submission
JOURNAL Submitted (16-JUL-2023) Molecular Biology and Genetics, Cornell
University, Biotechnology Bldg., 526 Campus Road, Ithaca, NY 14853,
USA
COMMENT ##Genome-Assembly-Data-START##
Assembly Date :: 03-JUN-2022
Assembly Method :: raven v. 1.7.0; sourmash v. MAR-2022;
racon v. 1.4.20; POLCA (in MaSuRCA) v.
4.0.8; 3d-dna v. 180419
Assembly Name :: Nippo_1.0
Genome Representation :: Full
Expected Final Version :: Yes
Genome Coverage :: 76.0x
Sequencing Technology :: Oxford Nanopore PromethION; Illumina
HiSeq; Omni-C
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Nippostrongylus brasiliensis"
/mol_type="genomic DNA"
/strain="MIMR"
/db_xref="taxon:27835"
/chromosome="IV"
/sex="pooled male and female"
/tissue_type="Whole animal"
/dev_stage="Adults"
/geo_loc_name="USA: Laboratory of Meera Nair, UC Riverside
School of Medicine, Riverside, CA"
/collection_date="2021/2022"
protein /locus_tag="Q1695_006267"
/note="NIPPO_CHRIV.G10107.T1"
intron_pos 23:0 (1/26)
intron_pos 50:0 (2/26)
intron_pos 87:0 (3/26)
intron_pos 129:0 (4/26)
intron_pos 149:2 (5/26)
intron_pos 180:1 (6/26)
intron_pos 226:0 (7/26)
intron_pos 269:0 (8/26)
intron_pos 308:0 (9/26)
intron_pos 360:2 (10/26)
intron_pos 395:0 (11/26)
intron_pos 420:1 (12/26)
intron_pos 471:0 (13/26)
intron_pos 523:0 (14/26)
intron_pos 579:0 (15/26)
intron_pos 621:0 (16/26)
intron_pos 673:1 (17/26)
intron_pos 720:1 (18/26)
intron_pos 757:0 (19/26)
intron_pos 780:0 (20/26)
intron_pos 843:1 (21/26)
intron_pos 957:0 (22/26)
intron_pos 993:1 (23/26)
intron_pos 1026:1 (24/26)
intron_pos 1065:0 (25/26)
intron_pos 1097:0 (26/26)
BEGIN
1 MSSEESDGDY QEQRGGDEEE EEVNNSGSAS ENQSGSEDES PKKKSRKRKI NSESEEEGSG
61 DESENDSEED EDGSPKTSKK HSKKKRKDRR PRGSDFILQD VDVDDEEQDE DEWDDEEDRA
121 LEPNEKEEAE KYMKQLDAER RRNERNKFAN MNEDEIGRYF ENKYKTQPIR DLVEDDSALD
181 DISQHGLLPS TKDPNLWIVK CRMGEEKLVA LQLMRKFLAF ENTNEPLQIK SIVVKEGLKG
241 IIYIEAFKQS HVANAINGIS ALNQFNVTMV PIKEMVDTLR VVKDVPSLKV NSYVRLKRTM
301 YKDDLAQVDW VDVAQSKVNL RIVPRIDYTR MRGALRTEAD RNHKVKRRPM PRLFDLDRIK
361 EIGGEVTNDG DFVIFEGNSY RRGFLYKSFP MNAIVAEGVK PTLAELERFQ DTSEDLKKEL
421 ESTTVKDNTH FFAPGDNVEV TEGELVNLRG KVVSVDGPKV VMLPDHEDLK EPLTLNMYEL
481 RKYFRPGDHV KMISGRYEGD TGLIVRVEHN LVVVLSDLSM DEMKARPRDV QLCADVTTGV
541 DSLGQFQFHD LVQLDQQNVG VIIRLEKETM EVLNQHGKTV RVKPQAIQGK KDSRHSQALD
601 SQQNPIQCKD VVKIIDGPFA AKKNEEEKQG EIKHVYRSWV FVYSRKHTEN GGMLVCKARH
661 LLLIGARANA GRVELPSMNR LSSPNPFASP RHNGSATPAH SSSQSVSGYS VGGKTPNHVG
721 NLAGFGGSGM GGGANKVRRD NAIIGKSVRI TQGPLKGYFG IVKDATEQTV RVELHTQCKT
781 ISVDRSRIAC VGDGTPGGSI AGMTQFAKTP FPGDDGRTPM YAGSKTPMYG SGAKTPMYGA
841 DEGGRTPFGS HTPSYDSSRT PIGGRTPAYD GGRTPAYDGG RTPAYDSGRT PMYDSGRTPS
901 YDTGRTPAYE GGRTPAYDSG RTPAYESGRT PTYEGGKTPA YEEPAASRRG DSSDEEDNEP
961 QYEAPASPSY SVPTPGTNLN PQTPGFAPET PMGNYNPMTP GGMYDYSAPS PYVRSTYDSF
1021 GGQKIPSHFL EGGEWVIEDL FVTIKSNHDE DRFQDREAIV TSVQDGRCQV YIPDLKCSAT
1081 ADFDQIEPLK PQEGDYTRVI YGDEVGVMGQ LLSVDEADCV IKVGADDMRL SPLEFCCKFS
1141 KR
//