LOCUS WKY05695.1 1108 aa PRT INV 31-JUL-2023
DEFINITION Nippostrongylus brasiliensis hypothetical protein protein.
ACCESSION CP130735-2520
PROTEIN_ID WKY05695.1
SOURCE Nippostrongylus brasiliensis
ORGANISM Nippostrongylus brasiliensis
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
Rhabditina; Rhabditomorpha; Strongyloidea; Heligmosomidae;
Nippostrongylus.
REFERENCE 1 (bases 1 to 50441521)
AUTHORS Schwarz,E.M., Baniya,A., Rodriguez,I.M., Lu,D., Bobardt,S.D.,
Anesko,K., Baker,L., Gouil,Q., Ritchie,M.E., Jex,A.R., Nair,M.G.
and Dillman,A.R.
TITLE A Nippostrongylus brasiliensis chromosomal reference genome and its
transcriptomics
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 50441521)
AUTHORS Schwarz,E.M., Baniya,A., Rodriguez,I.M., Lu,D., Bobardt,S.D.,
Anesko,K., Baker,L., Gouil,Q., Ritchie,M.E., Jex,A.R., Nair,M.G.
and Dillman,A.R.
TITLE Direct Submission
JOURNAL Submitted (16-JUL-2023) Molecular Biology and Genetics, Cornell
University, Biotechnology Bldg., 526 Campus Road, Ithaca, NY 14853,
USA
COMMENT ##Genome-Assembly-Data-START##
Assembly Date :: 03-JUN-2022
Assembly Method :: raven v. 1.7.0; sourmash v. MAR-2022;
racon v. 1.4.20; POLCA (in MaSuRCA) v.
4.0.8; 3d-dna v. 180419
Assembly Name :: Nippo_1.0
Genome Representation :: Full
Expected Final Version :: Yes
Genome Coverage :: 76.0x
Sequencing Technology :: Oxford Nanopore PromethION; Illumina
HiSeq; Omni-C
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Nippostrongylus brasiliensis"
/mol_type="genomic DNA"
/strain="MIMR"
/db_xref="taxon:27835"
/chromosome="IV"
/sex="pooled male and female"
/tissue_type="Whole animal"
/dev_stage="Adults"
/geo_loc_name="USA: Laboratory of Meera Nair, UC Riverside
School of Medicine, Riverside, CA"
/collection_date="2021/2022"
protein /locus_tag="Q1695_006135"
/note="NIPPO_CHRIV.G9975.T2"
intron_pos 33:0 (1/24)
intron_pos 75:0 (2/24)
intron_pos 123:2 (3/24)
intron_pos 139:2 (4/24)
intron_pos 170:0 (5/24)
intron_pos 200:1 (6/24)
intron_pos 233:2 (7/24)
intron_pos 252:1 (8/24)
intron_pos 274:0 (9/24)
intron_pos 308:1 (10/24)
intron_pos 358:0 (11/24)
intron_pos 442:0 (12/24)
intron_pos 514:2 (13/24)
intron_pos 692:1 (14/24)
intron_pos 711:1 (15/24)
intron_pos 749:1 (16/24)
intron_pos 796:2 (17/24)
intron_pos 847:2 (18/24)
intron_pos 886:0 (19/24)
intron_pos 916:0 (20/24)
intron_pos 961:0 (21/24)
intron_pos 1017:2 (22/24)
intron_pos 1053:2 (23/24)
intron_pos 1089:1 (24/24)
BEGIN
1 MVVVKLVQAV SACFLHSHLK CGGQLSLHAH RDTEFSQGPA DDSSAMTMQM TLLGGPPWGL
61 RMSNDQELRP VVSKVLMGGR AARAGVKIGD VLHSVNEMPV FTCRQAHSLI QKAKGQMRLG
121 IVRGGQAEST AVRRFVSKSF PMANLQNNQP YSGIRSVRLD LEAANGTTKA KRRFFEEQIA
181 RNSVTDRLLA RKIQLGMTHN GAPSESTAGY DSVEADFAGG AASNTTSSRT SPSLVAVGEF
241 DENTIIGSFR EVARLPPVQE VTMADEGPRS ETVVPDRRSV ADLRRQITQR LEMKAPESSS
301 RCPSRADSNC SPVPSRHFNN HNFIKVHEGA EPDVKPSKPW LGRVLDGPVP PEKFYQGVMP
361 PSLMQCASPV PAPVAKPPSP LPKPSKQKRN SFLNRIANES IPNDIPGYPA DEYSNHVEQQ
421 RRPIQNAEQH LDEQHVSPYE QMTTIEEAPK NDQTSWYSVQ DHPLPPTSPY RSAPFTERSF
481 DTVFQTTPME HGRQELPKVA SHEDEQNAQR ETDRMSELLK MRSPAPFTYA APPPTNQPET
541 RTNIQGSALQ ELTASLNEAL AAFAKPPLSA EVEVPPEEPQ KPVESQESLL PRQTAATHDH
601 ESLSTSSVTP SDPEMRHESQ ENLVRASELP ASSAAPTAAQ QQLEEPPTTG GGTTMYERFL
661 AGPSQQQQHT PEMSLWYRNM FKKMHKIESP NDASVLRHRI REESPAPTIS RPLTPLSFTA
721 HAPSRHECEV TPRRAKSVGR IVEPEEMFGE SGSMSNTAQE IAELKRISKE ELLYRQKAER
781 LAEELLEQRN RRHGYVPSAS PSVLNNKDRF GGLLDEYSQK SPSPVSVHAT SVRTATAIFK
841 FDAKSPRELS LNRGDIVRIR REVDVNWLEG ERNGQSGLFP RSYVQLDDEF DRCRSKAKAI
901 YPFTARRNTE LSLKMGEIVT LRREIDENWL EGTNHLGEIG IFPRNYVRLI DDRPEEKVSE
961 HPLFSPDRPK TPKIYDKDAY SDTLNAYQPS TYFPESTSFT RDVDFDNFSN TAPVGIRPTT
1021 SENSSLSRTI PLESSRTENY PCTADKIPKG SQTYRALFPY TPMKDDEVSL EVDDIIFVVE
1081 KCDDGWFIGT VLRTGQFGTF PGNYVERH
//