LOCUS WKY05682.1 1114 aa PRT INV 31-JUL-2023
DEFINITION Nippostrongylus brasiliensis hypothetical protein protein.
ACCESSION CP130735-2506
PROTEIN_ID WKY05682.1
SOURCE Nippostrongylus brasiliensis
ORGANISM Nippostrongylus brasiliensis
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
Rhabditina; Rhabditomorpha; Strongyloidea; Heligmosomidae;
Nippostrongylus.
REFERENCE 1 (bases 1 to 50441521)
AUTHORS Schwarz,E.M., Baniya,A., Rodriguez,I.M., Lu,D., Bobardt,S.D.,
Anesko,K., Baker,L., Gouil,Q., Ritchie,M.E., Jex,A.R., Nair,M.G.
and Dillman,A.R.
TITLE A Nippostrongylus brasiliensis chromosomal reference genome and its
transcriptomics
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 50441521)
AUTHORS Schwarz,E.M., Baniya,A., Rodriguez,I.M., Lu,D., Bobardt,S.D.,
Anesko,K., Baker,L., Gouil,Q., Ritchie,M.E., Jex,A.R., Nair,M.G.
and Dillman,A.R.
TITLE Direct Submission
JOURNAL Submitted (16-JUL-2023) Molecular Biology and Genetics, Cornell
University, Biotechnology Bldg., 526 Campus Road, Ithaca, NY 14853,
USA
COMMENT ##Genome-Assembly-Data-START##
Assembly Date :: 03-JUN-2022
Assembly Method :: raven v. 1.7.0; sourmash v. MAR-2022;
racon v. 1.4.20; POLCA (in MaSuRCA) v.
4.0.8; 3d-dna v. 180419
Assembly Name :: Nippo_1.0
Genome Representation :: Full
Expected Final Version :: Yes
Genome Coverage :: 76.0x
Sequencing Technology :: Oxford Nanopore PromethION; Illumina
HiSeq; Omni-C
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Nippostrongylus brasiliensis"
/mol_type="genomic DNA"
/strain="MIMR"
/db_xref="taxon:27835"
/chromosome="IV"
/sex="pooled male and female"
/tissue_type="Whole animal"
/dev_stage="Adults"
/geo_loc_name="USA: Laboratory of Meera Nair, UC Riverside
School of Medicine, Riverside, CA"
/collection_date="2021/2022"
protein /locus_tag="Q1695_006127"
/note="NIPPO_CHRIV.G9967.T2"
intron_pos 37:0 (1/26)
intron_pos 88:2 (2/26)
intron_pos 130:2 (3/26)
intron_pos 186:0 (4/26)
intron_pos 233:0 (5/26)
intron_pos 264:2 (6/26)
intron_pos 288:0 (7/26)
intron_pos 317:1 (8/26)
intron_pos 350:0 (9/26)
intron_pos 389:0 (10/26)
intron_pos 440:0 (11/26)
intron_pos 471:0 (12/26)
intron_pos 504:0 (13/26)
intron_pos 545:0 (14/26)
intron_pos 569:2 (15/26)
intron_pos 622:2 (16/26)
intron_pos 670:0 (17/26)
intron_pos 713:0 (18/26)
intron_pos 754:0 (19/26)
intron_pos 786:1 (20/26)
intron_pos 830:0 (21/26)
intron_pos 860:1 (22/26)
intron_pos 923:2 (23/26)
intron_pos 978:0 (24/26)
intron_pos 1031:0 (25/26)
intron_pos 1073:0 (26/26)
BEGIN
1 MSPVASLALG ILLVLLQTEY AGSTSCSFYC FVTPSRKETF DVASYNNLSC THFVYGFTRT
61 RSDLSLRSVT SRDNLEVMNP GNLRKFLGLR NSHPEATLLL GVELTPKNVF HDVRHARRVA
121 ERIGLSARKR HFDGVFIRMH GPALESSITQ HFLSVSWLFT TFKLQFSFLL LAGEYFDIIS
181 SIVVAALSLT YSSTSSETTL SVTPRWLWTS GSRLHEFVDH VEHVYLDMEE LPSAEDEFSV
241 SHLDPLMPSD SIPFEDTISG STEKLLSSGV PSEKIIIGLS SGGKTYRVRR PKSTVHGDMA
301 MQPAIRRPLQ DLCHSTRTFV DEKSGNTVIE GRFNWTSANF PKLSSLGKKI EWIMQEGLGG
361 IGISSLQFDD PKGKCGAGSY PSHTMIGQML KCRTKEFVRR PSVQCTRLCY LDETAEEFDP
421 WSLQTHWCSH MVIGPADIQL TDMVELTPAA EQLITNVEQW WHGTEHKPAK IILSIGARQT
481 SDIWRMELGS IIKRKHLINN IKRLAVAKNA VGVEISWTLG VLDSTIDPSL LTRFLTELRL
541 VLPKDINVYL TVNPMSSFAG RYDVKAIQNV TDFIILQTHR LHSQRQPIAG HHSAMFAGDG
601 MQDGRMTVEV FVKDWISRGV PREKIVVSLS AAPTTTTMMQ EWDGTGELFG RPINLTPFLE
661 PSEITSQTEI CQTLQDNSTD AVLHWMDTSS VPVIVHGLQL VTFDNERSAK IKATWSSLNN
721 LGGMAIHGLP FDNPNGECPD RPFPILQSIV DTQVCALCAA EEEKESTCPH GFQTVCNYRL
781 PEPDEAESLS PATIPFERCS EVVVEHAIID INASIHFVSK EQEEVAKQLK NYHSRAKRVV
841 VSLRCSMDVE DFAHLMHSSA KRMKLAASIR SFADNFSFNG VELRCADVVT KATKIQFAHF
901 LRVLNKEMKK NPSEKCGNTV SLRLSAWHSD LRSVYDVMAL NSLHHVVLEP FTVPLLPETA
961 FANSPLFPVV NQSLTSIDVI VQRWERSGLI RSKILLQIPS YGMEQLLVNR TDVGIGRPTE
1021 REYAIIGQAE LCQRLKYAGT VRKTHWDSMS VNAWTTGGRW ISIDDQQTVK YKMRYALREG
1081 LAGVGLLSLN EDDHQGTCGS GAFPILRSIS AKCH
//