LOCUS WKY05601.1 1476 aa PRT INV 31-JUL-2023
DEFINITION Nippostrongylus brasiliensis hypothetical protein protein.
ACCESSION CP130735-2424
PROTEIN_ID WKY05601.1
SOURCE Nippostrongylus brasiliensis
ORGANISM Nippostrongylus brasiliensis
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
Rhabditina; Rhabditomorpha; Strongyloidea; Heligmosomidae;
Nippostrongylus.
REFERENCE 1 (bases 1 to 50441521)
AUTHORS Schwarz,E.M., Baniya,A., Rodriguez,I.M., Lu,D., Bobardt,S.D.,
Anesko,K., Baker,L., Gouil,Q., Ritchie,M.E., Jex,A.R., Nair,M.G.
and Dillman,A.R.
TITLE A Nippostrongylus brasiliensis chromosomal reference genome and its
transcriptomics
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 50441521)
AUTHORS Schwarz,E.M., Baniya,A., Rodriguez,I.M., Lu,D., Bobardt,S.D.,
Anesko,K., Baker,L., Gouil,Q., Ritchie,M.E., Jex,A.R., Nair,M.G.
and Dillman,A.R.
TITLE Direct Submission
JOURNAL Submitted (16-JUL-2023) Molecular Biology and Genetics, Cornell
University, Biotechnology Bldg., 526 Campus Road, Ithaca, NY 14853,
USA
COMMENT ##Genome-Assembly-Data-START##
Assembly Date :: 03-JUN-2022
Assembly Method :: raven v. 1.7.0; sourmash v. MAR-2022;
racon v. 1.4.20; POLCA (in MaSuRCA) v.
4.0.8; 3d-dna v. 180419
Assembly Name :: Nippo_1.0
Genome Representation :: Full
Expected Final Version :: Yes
Genome Coverage :: 76.0x
Sequencing Technology :: Oxford Nanopore PromethION; Illumina
HiSeq; Omni-C
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Nippostrongylus brasiliensis"
/mol_type="genomic DNA"
/strain="MIMR"
/db_xref="taxon:27835"
/chromosome="IV"
/sex="pooled male and female"
/tissue_type="Whole animal"
/dev_stage="Adults"
/geo_loc_name="USA: Laboratory of Meera Nair, UC Riverside
School of Medicine, Riverside, CA"
/collection_date="2021/2022"
protein /locus_tag="Q1695_006083"
/note="NIPPO_CHRIV.G9923.T3"
intron_pos 22:0 (1/36)
intron_pos 59:0 (2/36)
intron_pos 109:1 (3/36)
intron_pos 138:0 (4/36)
intron_pos 185:0 (5/36)
intron_pos 211:0 (6/36)
intron_pos 267:0 (7/36)
intron_pos 321:0 (8/36)
intron_pos 370:0 (9/36)
intron_pos 406:1 (10/36)
intron_pos 440:2 (11/36)
intron_pos 489:2 (12/36)
intron_pos 543:2 (13/36)
intron_pos 584:2 (14/36)
intron_pos 635:2 (15/36)
intron_pos 673:1 (16/36)
intron_pos 693:0 (17/36)
intron_pos 747:1 (18/36)
intron_pos 814:0 (19/36)
intron_pos 853:0 (20/36)
intron_pos 894:2 (21/36)
intron_pos 924:0 (22/36)
intron_pos 952:0 (23/36)
intron_pos 975:0 (24/36)
intron_pos 1010:0 (25/36)
intron_pos 1036:1 (26/36)
intron_pos 1072:1 (27/36)
intron_pos 1109:0 (28/36)
intron_pos 1142:0 (29/36)
intron_pos 1196:0 (30/36)
intron_pos 1223:0 (31/36)
intron_pos 1254:0 (32/36)
intron_pos 1297:0 (33/36)
intron_pos 1326:2 (34/36)
intron_pos 1359:0 (35/36)
intron_pos 1414:2 (36/36)
BEGIN
1 MSGRDDDRRI FEHFVIAGLS QDSPEQATPS SQEFGYRNSS PLAPITDICV IFPSLGETAP
61 EGYEIIDTTQ LGYPADLNHG SIRMPSVFLC YRRGYHKPPL LDIGLIEYGR GEKPMVDTNI
121 VQTTPFGRPA NVNNASQNIF LTYRRAVPSS APSQFVVTDI CVILANKGEI PLHTYYKIPK
181 NLNKGMVGSD VYICYKKSQC STKRLAYKPT VLDYFPKNKT NDNEDDFKLA QNISLFCLPM
241 GALIECWPVK CQPPDRVFST FVLTDENGTK FYGASVSFFE KYDNDLTEEQ LEQLELNSTS
301 RVDEAGAVED SSSNNDPADE MTFYTNVAIC IISRYPFFNS FKRFLYYIHR MSIGGGIHAV
361 PIERYISHLM YEVSFPTPRR PHVLMQLGSE TISFDCHDDS QLPLNGAQLC DTLRALGTDN
421 LIYLMMLALL EQKILVHSLR SWMLTAVSES VCALMFPFHW QCPYVPQCPL GLAGVLHAPL
481 PFIAGVDSRY FDLYEDPPPD VTCFDLDTAT ISQSLNRLSL KLSILPKKPT KILKNTLDDL
541 LRRLNKEAFD LGSKKADYVP VDREMIIQKK RKELELAIHD AFLRFMASLM RGYQAFLRPI
601 KSAPASVSAT DTGNLFDLDG FLRSRDKSGA EFFKRFVATQ SFIRFIEERC FISDKSTFNA
661 FFDDCITKVD LSEGTAAPLL EADFSGHLNN TSVFIAPPEP IIDPVTGHER EFKYDRFPRH
721 LDPTLYQLDQ LNMNRSADQQ PVPVQYEHNR CAAVRTKPEV KSSILAATNS VRTNPLHWPK
781 TLLFYSYSLW FMQLPSLIAI APNKRKILLL AFHILDRMEH TEVFPLDQVC YRILIELCGE
841 CGEPSLAVKV LQAMHRAGVE QNAVTYGIYH RAVLNAKWPS PARQRAVCAW TQLRLFLNAV
901 ARFKLCIRSN SQTNCLPVPD TQSESHELDT KPYVISYHSL PGGKEIHTDV EDESAGKTNP
961 SDPLGALAIT ETTKSAPSNL PMSPSRAKFM AELESTPFAS ELNPKSESKN ANKSLGWLKG
1021 ITNSPIMKMI RNQSFENPRQ PDIEPQGMTM SPSLHAIVNQ MWKGYDDVRM DAVSSKLKMG
1081 VSSLVREVKS LNRSYRERGS GTLFGDELDD EMFDFDEEDR AYQLDCGKAD SILSEDWWLK
1141 EVYQQLRRNE IRKLEKEEGV VQSGYGIMDV TLSSCTPCPN CRLMNYDEEI MSGWKVDDQN
1201 LNTACAYCCA SDEEKGGSER TGVFAPRLTV RLERKEKPST SWYRLNVFDA DAEQNPSNLS
1261 PDPIQDTQDI CVSYISPLVL RREVETLLAS DLWALKDPNI MTTHPVVYWN LVFYLRRLAL
1321 PTHLYMWIAP RVHLRCVYDR PLDHLGPTPL YLVNPNHKLL SPEKITRTLP VWRTVTQSVQ
1381 DNRLFTAIQT LINDSRRVTD NGQIALGPHF PVFRDIQFAS LDAFGRALLR DSLDKQYVEE
1441 YTKLPPRIMY IIPKQDQPQT AVQRACRKIF LPLDLF
//