LOCUS WKY05599.1 1492 aa PRT INV 31-JUL-2023
DEFINITION Nippostrongylus brasiliensis hypothetical protein protein.
ACCESSION CP130735-2425
PROTEIN_ID WKY05599.1
SOURCE Nippostrongylus brasiliensis
ORGANISM Nippostrongylus brasiliensis
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
Rhabditina; Rhabditomorpha; Strongyloidea; Heligmosomidae;
Nippostrongylus.
REFERENCE 1 (bases 1 to 50441521)
AUTHORS Schwarz,E.M., Baniya,A., Rodriguez,I.M., Lu,D., Bobardt,S.D.,
Anesko,K., Baker,L., Gouil,Q., Ritchie,M.E., Jex,A.R., Nair,M.G.
and Dillman,A.R.
TITLE A Nippostrongylus brasiliensis chromosomal reference genome and its
transcriptomics
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 50441521)
AUTHORS Schwarz,E.M., Baniya,A., Rodriguez,I.M., Lu,D., Bobardt,S.D.,
Anesko,K., Baker,L., Gouil,Q., Ritchie,M.E., Jex,A.R., Nair,M.G.
and Dillman,A.R.
TITLE Direct Submission
JOURNAL Submitted (16-JUL-2023) Molecular Biology and Genetics, Cornell
University, Biotechnology Bldg., 526 Campus Road, Ithaca, NY 14853,
USA
COMMENT ##Genome-Assembly-Data-START##
Assembly Date :: 03-JUN-2022
Assembly Method :: raven v. 1.7.0; sourmash v. MAR-2022;
racon v. 1.4.20; POLCA (in MaSuRCA) v.
4.0.8; 3d-dna v. 180419
Assembly Name :: Nippo_1.0
Genome Representation :: Full
Expected Final Version :: Yes
Genome Coverage :: 76.0x
Sequencing Technology :: Oxford Nanopore PromethION; Illumina
HiSeq; Omni-C
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Nippostrongylus brasiliensis"
/mol_type="genomic DNA"
/strain="MIMR"
/db_xref="taxon:27835"
/chromosome="IV"
/sex="pooled male and female"
/tissue_type="Whole animal"
/dev_stage="Adults"
/geo_loc_name="USA: Laboratory of Meera Nair, UC Riverside
School of Medicine, Riverside, CA"
/collection_date="2021/2022"
protein /locus_tag="Q1695_006083"
/note="NIPPO_CHRIV.G9923.T1"
intron_pos 22:0 (1/36)
intron_pos 59:0 (2/36)
intron_pos 109:1 (3/36)
intron_pos 138:0 (4/36)
intron_pos 185:0 (5/36)
intron_pos 211:0 (6/36)
intron_pos 267:0 (7/36)
intron_pos 321:0 (8/36)
intron_pos 370:0 (9/36)
intron_pos 406:1 (10/36)
intron_pos 440:2 (11/36)
intron_pos 489:2 (12/36)
intron_pos 543:2 (13/36)
intron_pos 584:2 (14/36)
intron_pos 635:2 (15/36)
intron_pos 673:1 (16/36)
intron_pos 693:0 (17/36)
intron_pos 747:1 (18/36)
intron_pos 814:0 (19/36)
intron_pos 853:0 (20/36)
intron_pos 894:2 (21/36)
intron_pos 941:0 (22/36)
intron_pos 969:0 (23/36)
intron_pos 992:0 (24/36)
intron_pos 1027:0 (25/36)
intron_pos 1053:1 (26/36)
intron_pos 1089:1 (27/36)
intron_pos 1126:0 (28/36)
intron_pos 1159:0 (29/36)
intron_pos 1213:0 (30/36)
intron_pos 1240:0 (31/36)
intron_pos 1271:0 (32/36)
intron_pos 1313:0 (33/36)
intron_pos 1342:2 (34/36)
intron_pos 1375:0 (35/36)
intron_pos 1430:2 (36/36)
BEGIN
1 MSGRDDDRRI FEHFVIAGLS QDSPEQATPS SQEFGYRNSS PLAPITDICV IFPSLGETAP
61 EGYEIIDTTQ LGYPADLNHG SIRMPSVFLC YRRGYHKPPL LDIGLIEYGR GEKPMVDTNI
121 VQTTPFGRPA NVNNASQNIF LTYRRAVPSS APSQFVVTDI CVILANKGEI PLHTYYKIPK
181 NLNKGMVGSD VYICYKKSQC STKRLAYKPT VLDYFPKNKT NDNEDDFKLA QNISLFCLPM
241 GALIECWPVK CQPPDRVFST FVLTDENGTK FYGASVSFFE KYDNDLTEEQ LEQLELNSTS
301 RVDEAGAVED SSSNNDPADE MTFYTNVAIC IISRYPFFNS FKRFLYYIHR MSIGGGIHAV
361 PIERYISHLM YEVSFPTPRR PHVLMQLGSE TISFDCHDDS QLPLNGAQLC DTLRALGTDN
421 LIYLMMLALL EQKILVHSLR SWMLTAVSES VCALMFPFHW QCPYVPQCPL GLAGVLHAPL
481 PFIAGVDSRY FDLYEDPPPD VTCFDLDTAT ISQSLNRLSL KLSILPKKPT KILKNTLDDL
541 LRRLNKEAFD LGSKKADYVP VDREMIIQKK RKELELAIHD AFLRFMASLM RGYQAFLRPI
601 KSAPASVSAT DTGNLFDLDG FLRSRDKSGA EFFKRFVATQ SFIRFIEERC FISDKSTFNA
661 FFDDCITKVD LSEGTAAPLL EADFSGHLNN TSVFIAPPEP IIDPVTGHER EFKYDRFPRH
721 LDPTLYQLDQ LNMNRSADQQ PVPVQYEHNR CAAVRTKPEV KSSILAATNS VRTNPLHWPK
781 TLLFYSYSLW FMQLPSLIAI APNKRKILLL AFHILDRMEH TEVFPLDQVC YRILIELCGE
841 CGEPSLAVKV LQAMHRAGVE QNAVTYGIYH RAVLNAKWPS PARQRAVCAW TQLRLFLNAV
901 ARFKLCIRSN SQTNCLPVPD TQSVSDSGYH SDKTAEERRL ESHELDTKPY VISYHSLPGG
961 KEIHTDVEDE SAGKTNPSDP LGALAITETT KSAPSNLPMS PSRAKFMAEL ESTPFASELN
1021 PKSESKNANK SLGWLKGITN SPIMKMIRNQ SFENPRQPDI EPQGMTMSPS LHAIVNQMWK
1081 GYDDVRMDAV SSKLKMGVSS LVREVKSLNR SYRERGSGTL FGDELDDEMF DFDEEDRAYQ
1141 LDCGKADSIL SEDWWLKEVY QQLRRNEIRK LEKEEGVVQS GYGIMDVTLS SCTPCPNCRL
1201 MNYDEEIMSG WKVDDQNLNT ACAYCCASDE EKGGSERTGV FAPRLTVRLE RKEKPSTSWY
1261 RLNVFDADAE NPSNLSPDPI QDTQDICVSY ISPLVLRREV ETLLASDLWA LKDPNIMTTH
1321 PVVYWNLVFY LRRLALPTHL YMWIAPRVHL RCVYDRPLDH LGPTPLYLVN PNHKLLSPEK
1381 ITRTLPVWRT VTQSVQDNRL FTAIQTLIND SRRVTDNGQI ALGPHFPVFR DIQFASLDAF
1441 GRALLRDSLD KQYVEEYTKL PPRIMYIIPK QDQPQTAVQR ACRKIFLPLD LF
//