LOCUS WKY04854.1 883 aa PRT INV 31-JUL-2023
DEFINITION Nippostrongylus brasiliensis hypothetical protein protein.
ACCESSION CP130735-1680
PROTEIN_ID WKY04854.1
SOURCE Nippostrongylus brasiliensis
ORGANISM Nippostrongylus brasiliensis
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
Rhabditina; Rhabditomorpha; Strongyloidea; Heligmosomidae;
Nippostrongylus.
REFERENCE 1 (bases 1 to 50441521)
AUTHORS Schwarz,E.M., Baniya,A., Rodriguez,I.M., Lu,D., Bobardt,S.D.,
Anesko,K., Baker,L., Gouil,Q., Ritchie,M.E., Jex,A.R., Nair,M.G.
and Dillman,A.R.
TITLE A Nippostrongylus brasiliensis chromosomal reference genome and its
transcriptomics
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 50441521)
AUTHORS Schwarz,E.M., Baniya,A., Rodriguez,I.M., Lu,D., Bobardt,S.D.,
Anesko,K., Baker,L., Gouil,Q., Ritchie,M.E., Jex,A.R., Nair,M.G.
and Dillman,A.R.
TITLE Direct Submission
JOURNAL Submitted (16-JUL-2023) Molecular Biology and Genetics, Cornell
University, Biotechnology Bldg., 526 Campus Road, Ithaca, NY 14853,
USA
COMMENT ##Genome-Assembly-Data-START##
Assembly Date :: 03-JUN-2022
Assembly Method :: raven v. 1.7.0; sourmash v. MAR-2022;
racon v. 1.4.20; POLCA (in MaSuRCA) v.
4.0.8; 3d-dna v. 180419
Assembly Name :: Nippo_1.0
Genome Representation :: Full
Expected Final Version :: Yes
Genome Coverage :: 76.0x
Sequencing Technology :: Oxford Nanopore PromethION; Illumina
HiSeq; Omni-C
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Nippostrongylus brasiliensis"
/mol_type="genomic DNA"
/strain="MIMR"
/db_xref="taxon:27835"
/chromosome="IV"
/sex="pooled male and female"
/tissue_type="Whole animal"
/dev_stage="Adults"
/geo_loc_name="USA: Laboratory of Meera Nair, UC Riverside
School of Medicine, Riverside, CA"
/collection_date="2021/2022"
protein /locus_tag="Q1695_005675"
/note="NIPPO_CHRIV.G9515.T1"
intron_pos 16:0 (1/23)
intron_pos 38:0 (2/23)
intron_pos 67:0 (3/23)
intron_pos 118:0 (4/23)
intron_pos 142:0 (5/23)
intron_pos 161:0 (6/23)
intron_pos 249:1 (7/23)
intron_pos 278:2 (8/23)
intron_pos 373:0 (9/23)
intron_pos 416:0 (10/23)
intron_pos 457:2 (11/23)
intron_pos 477:0 (12/23)
intron_pos 499:1 (13/23)
intron_pos 537:2 (14/23)
intron_pos 560:0 (15/23)
intron_pos 589:2 (16/23)
intron_pos 628:0 (17/23)
intron_pos 670:1 (18/23)
intron_pos 708:1 (19/23)
intron_pos 736:0 (20/23)
intron_pos 776:2 (21/23)
intron_pos 813:1 (22/23)
intron_pos 857:2 (23/23)
BEGIN
1 MRWLAILLTN LVVVKSQDFT ALLGPLLGGG GGGGGIGNIL AGLGGGGGGK GPDIGSLFQL
61 GAGLLGNGGG GGGGGFPLPI PGPKKAPGRG GGGRGAIGGG PTNVLIPDYS DYQDGQTAPV
121 SNAQRQKKQQ RQNQKRKRQQ QHRRQKRRRD QQRRRKARQL AAPAPPPPPA PTPPVAGPAA
181 TAAIVPNTPD ALKPPNGLAW IKEHEFTAPE DLETDYEVVG MAGPMGQAAP PPQAPPPPPP
241 PQKFTPVGRS EPRAPKSIYH YPNARTFVSN QATVPPPRFY AQVVPVVAQP QFVTAAVPQP
301 NYVPQQLIVQ PIAQTPVVQP VPQPQYYWNN AAAAPTAAPI VQTPPPPITI ATLAPLATTR
361 PNPQLLAHNT ARMIREIATF SDVHHGPNDN YGAVQTLMEA FFEALADPKS AAAAQDPTPA
421 QAVFQPLYDG TELGANRPLT NKLFESDMVL TVEQMKGVVL AARDQRRGGL RRGKRKVITG
481 AVYRWPKAAI PYRFKEGDET WRNLIRSALK NWEKETCVRW EENGRGKDHV IFFRGSGCYS
541 NVGRTGGSQM ISIGYGCEDK GVVAHEVGHS LGFWHEQSRP DRDQYITLNK HFIIRGTDGN
601 FERRTTQEIE DMGLPYDLGS VMHYGPNAFT KDWNEITIRT NDKNYQRTIG QRVEPSFIDV
661 KQVNRLYCND VCAPMACKNG GYADPNNCSR CKCPPGLAGK TCDEIPQGCG GELFATPVWQ
721 ELGHRGKGKC YWRIRTNNAR IRFILSGISY RCETTCKAYV EIKHNSDFQQ TGFRACCNEH
781 EIQVTSEQAE VLIISDSTEL NYETGFNLRY IQDSGLPLPK PPPAVWVPGS ENRGFRGAGS
841 STGPIEKFIL NAIPKVRDPR RPWESIASIV TEYSVASLLG IRN
//