LOCUS WKY04773.1 972 aa PRT INV 31-JUL-2023
DEFINITION Nippostrongylus brasiliensis hypothetical protein protein.
ACCESSION CP130735-1597
PROTEIN_ID WKY04773.1
SOURCE Nippostrongylus brasiliensis
ORGANISM Nippostrongylus brasiliensis
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
Rhabditina; Rhabditomorpha; Strongyloidea; Heligmosomidae;
Nippostrongylus.
REFERENCE 1 (bases 1 to 50441521)
AUTHORS Schwarz,E.M., Baniya,A., Rodriguez,I.M., Lu,D., Bobardt,S.D.,
Anesko,K., Baker,L., Gouil,Q., Ritchie,M.E., Jex,A.R., Nair,M.G.
and Dillman,A.R.
TITLE A Nippostrongylus brasiliensis chromosomal reference genome and its
transcriptomics
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 50441521)
AUTHORS Schwarz,E.M., Baniya,A., Rodriguez,I.M., Lu,D., Bobardt,S.D.,
Anesko,K., Baker,L., Gouil,Q., Ritchie,M.E., Jex,A.R., Nair,M.G.
and Dillman,A.R.
TITLE Direct Submission
JOURNAL Submitted (16-JUL-2023) Molecular Biology and Genetics, Cornell
University, Biotechnology Bldg., 526 Campus Road, Ithaca, NY 14853,
USA
COMMENT ##Genome-Assembly-Data-START##
Assembly Date :: 03-JUN-2022
Assembly Method :: raven v. 1.7.0; sourmash v. MAR-2022;
racon v. 1.4.20; POLCA (in MaSuRCA) v.
4.0.8; 3d-dna v. 180419
Assembly Name :: Nippo_1.0
Genome Representation :: Full
Expected Final Version :: Yes
Genome Coverage :: 76.0x
Sequencing Technology :: Oxford Nanopore PromethION; Illumina
HiSeq; Omni-C
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Nippostrongylus brasiliensis"
/mol_type="genomic DNA"
/strain="MIMR"
/db_xref="taxon:27835"
/chromosome="IV"
/sex="pooled male and female"
/tissue_type="Whole animal"
/dev_stage="Adults"
/geo_loc_name="USA: Laboratory of Meera Nair, UC Riverside
School of Medicine, Riverside, CA"
/collection_date="2021/2022"
protein /locus_tag="Q1695_005634"
/note="NIPPO_CHRIV.G9474.T2"
intron_pos 23:0 (1/26)
intron_pos 52:0 (2/26)
intron_pos 89:2 (3/26)
intron_pos 117:0 (4/26)
intron_pos 152:0 (5/26)
intron_pos 191:0 (6/26)
intron_pos 209:1 (7/26)
intron_pos 244:2 (8/26)
intron_pos 291:2 (9/26)
intron_pos 327:1 (10/26)
intron_pos 375:0 (11/26)
intron_pos 398:0 (12/26)
intron_pos 431:1 (13/26)
intron_pos 461:0 (14/26)
intron_pos 504:2 (15/26)
intron_pos 530:2 (16/26)
intron_pos 556:2 (17/26)
intron_pos 592:0 (18/26)
intron_pos 631:0 (19/26)
intron_pos 672:0 (20/26)
intron_pos 713:0 (21/26)
intron_pos 779:0 (22/26)
intron_pos 804:0 (23/26)
intron_pos 834:2 (24/26)
intron_pos 861:1 (25/26)
intron_pos 899:1 (26/26)
BEGIN
1 MGWGTILLQL HVIATIATAV RQLTVPGEIV LGGLFPIHEA GRNGSHCGKI KADQGVQRMV
61 AMLYALEKVN QDITVLPQAS LGAQILDTCS VDSYALEQTL EFIKSVMSSG DGAVCADGSS
121 ASYHRQPVAA VVGAAGSQVS VMVASMLQLF KIPQVSYSST GAELSEKPRF GYFSRVVPPD
181 NLQAQVMARV VRALDWTYVH AIADTGSYGE RGMDSFRAAA TELGICIDGD VHKISRRWTD
241 KNFRDLLVHM HRTRKARGVV MFVDEDNLKR LLHTLDKLIK DGHKELERHF WFVASDSWGI
301 KQSVVLGLEH LLAGSITIAP HVREEKAYIT FFRKLSPTGF TFLEEYWEYL GCSENFELKY
361 FGECFDYINY TLKQESYVPF VIDAVRVLAK AISRYISDEC GRREFHRCDL STSRFQGDRL
421 QRYYRNVSLS ENEPPLIDAN GDGIGRYDVF QLDSKGVYQK VGKWRSSEDS FEVRVEQVRR
481 GFRLPPGVSP FSVCSVDCPR GHYRAYQDQT CCWACIPCDT ATSIIINVTR CDMCPEGEVP
541 DPSLSFCVPI PPVSMRWDSA WALIPAGFSL LGLTSTIFVV GVFLKFSNTP VIMASGRELC
601 YCMISGISMC YVLTFFLVSQ PTIPTCALTR VLMGLSMSAI YAAIITKTNR LARVFKPDSA
661 QRPRFITPKA QVAICVSIVS VQLVGSIVWL LVDPPGTKVV FPSRTEAVLT CKATAKHLLV
721 SLLYNLLLIV ACTVYAFKTR KIPENFNETR HIGFTMYSTC ILWLSFGPIY FATQNNFRIQ
781 ITSLCMCISL SGTVALVCFF APKVYIVLFQ PYKNVRTRQS AVGRLVNQQM RFMSQLTCNQ
841 DGTTGYKSMS TASNPSYRPG SEENSRGSTQ ASMIHPLPPL PCVEKLTTDN NGIAKSEIGK
901 KLSLPAAEKD APDLLTANDV RRRRPTSLYT TMPDVVRPLP LPMTLPLGVN ECDSQVALIL
961 EEIATDSHVT FL
//