LOCUS WKY04726.1 1139 aa PRT INV 31-JUL-2023
DEFINITION Nippostrongylus brasiliensis hypothetical protein protein.
ACCESSION CP130735-1550
PROTEIN_ID WKY04726.1
SOURCE Nippostrongylus brasiliensis
ORGANISM Nippostrongylus brasiliensis
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
Rhabditina; Rhabditomorpha; Strongyloidea; Heligmosomidae;
Nippostrongylus.
REFERENCE 1 (bases 1 to 50441521)
AUTHORS Schwarz,E.M., Baniya,A., Rodriguez,I.M., Lu,D., Bobardt,S.D.,
Anesko,K., Baker,L., Gouil,Q., Ritchie,M.E., Jex,A.R., Nair,M.G.
and Dillman,A.R.
TITLE A Nippostrongylus brasiliensis chromosomal reference genome and its
transcriptomics
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 50441521)
AUTHORS Schwarz,E.M., Baniya,A., Rodriguez,I.M., Lu,D., Bobardt,S.D.,
Anesko,K., Baker,L., Gouil,Q., Ritchie,M.E., Jex,A.R., Nair,M.G.
and Dillman,A.R.
TITLE Direct Submission
JOURNAL Submitted (16-JUL-2023) Molecular Biology and Genetics, Cornell
University, Biotechnology Bldg., 526 Campus Road, Ithaca, NY 14853,
USA
COMMENT ##Genome-Assembly-Data-START##
Assembly Date :: 03-JUN-2022
Assembly Method :: raven v. 1.7.0; sourmash v. MAR-2022;
racon v. 1.4.20; POLCA (in MaSuRCA) v.
4.0.8; 3d-dna v. 180419
Assembly Name :: Nippo_1.0
Genome Representation :: Full
Expected Final Version :: Yes
Genome Coverage :: 76.0x
Sequencing Technology :: Oxford Nanopore PromethION; Illumina
HiSeq; Omni-C
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Nippostrongylus brasiliensis"
/mol_type="genomic DNA"
/strain="MIMR"
/db_xref="taxon:27835"
/chromosome="IV"
/sex="pooled male and female"
/tissue_type="Whole animal"
/dev_stage="Adults"
/geo_loc_name="USA: Laboratory of Meera Nair, UC Riverside
School of Medicine, Riverside, CA"
/collection_date="2021/2022"
protein /locus_tag="Q1695_005606"
/note="NIPPO_CHRIV.G9446.T2"
intron_pos 51:1 (1/33)
intron_pos 93:2 (2/33)
intron_pos 130:1 (3/33)
intron_pos 169:0 (4/33)
intron_pos 191:0 (5/33)
intron_pos 223:0 (6/33)
intron_pos 249:1 (7/33)
intron_pos 287:0 (8/33)
intron_pos 316:0 (9/33)
intron_pos 347:0 (10/33)
intron_pos 396:1 (11/33)
intron_pos 432:0 (12/33)
intron_pos 459:0 (13/33)
intron_pos 518:2 (14/33)
intron_pos 547:0 (15/33)
intron_pos 579:2 (16/33)
intron_pos 599:0 (17/33)
intron_pos 630:2 (18/33)
intron_pos 693:1 (19/33)
intron_pos 726:1 (20/33)
intron_pos 756:0 (21/33)
intron_pos 788:1 (22/33)
intron_pos 809:0 (23/33)
intron_pos 845:2 (24/33)
intron_pos 860:0 (25/33)
intron_pos 892:2 (26/33)
intron_pos 917:2 (27/33)
intron_pos 957:0 (28/33)
intron_pos 992:0 (29/33)
intron_pos 1015:1 (30/33)
intron_pos 1036:0 (31/33)
intron_pos 1080:0 (32/33)
intron_pos 1107:0 (33/33)
BEGIN
1 MRVTTFFMPM LIGVFSDEKD QSGYSQTEND TMSTAYQGNA NDTSAVFDAK GRIRIKVGHI
61 GAMNALRNDA KVLELSRVSL LNERILDDSF DLEIISQTGC GESLEGVAVA ADMYHLQKVK
121 VFIGPYCNAE MDAVARMAAF WNIPIIGYMA ASNSLSDKKA YPTLARVSLR TTNSIAEATC
181 ALLRHYGWYK VAIVTNTGSL AYDRTYAFEE VFHARQVKVI KKIVFDEWAD AKAMLASGLL
241 QELKMTARII ICLFSNTRES SREFLTAANS QGMAVNEYAY VLPWLQDGAK DTSPWIAADG
301 SILQKVKDQY ANAIIVDDVN SFDNSIIQPF LERIKEAGLS EADVDIANIY GYLYLFDSLK
361 LYAIAAKKVM NETGGVKNVV NGRLVWNTMR RLRFSGMLGS SGIASGVVTM DDRGERAPLY
421 RGFFVSPNSE QVLPMIHLEP TMIKDCDGVQ NRSGCYDIVV TDIMRDFWPS VDRRMPKDEP
481 SCGFRGERCD FTLVIVGGVL VILLLLAMAS IYFIRRLIEK RALDKLPFRI YRDDIQFIDE
541 EQLKSMLSLG STRTKMSNTN YGCRNHAIIG TNTHAIYHKY PQRRPIFFSR ADKGLLVWMK
601 QAIHDNINPF LGIAFNEKEE VLILWKFCSR GTLQDIVYND NIALDQKFHG AFIRDILSGL
661 EYLHASAIGY HGALSTWSCL IDRNWMIKLT DYGIADPLER WEKQQAISVD GLKDGDDKTQ
721 ALQATSALYE APEMLKNREK NRLRRVDENW MKLTMNRKQL ADIYAFGVVM YEIFFRALPF
781 PEGTDISELV ETIKDGSKVV KPTIQKNKVL NMDLTNLIED CWNGSPEMRP SLRRIKLNVE
841 TYLKVRGSLV DQMMRMMEEY ANNLERTVQE RTGMLEEANV RADKLLSQLL PAYVASELKQ
901 GRSVPPKMFS SATILFSDIV GFADLCQSAT PLEVVNVLNG VFDGFDQFIA RRDAYKVETI
961 GDAYMVVSGV PEENGHRHIN EIAGIALDVH KYLTDFAVPH KPRERIVCRL GFHTGPVAAA
1021 VVGLNAPRYC LFGDTVNMSS RMESNSEPGK TQISEPANKL LLEHYPDYET EERGQISVKG
1081 KGMCTTYWLL GVKQTSSNTY QAPTSQEGSN FGGLLGVSGS TSTIGSTKLK NPSGSVKSK
//