LOCUS WKY04430.1 1031 aa PRT INV 31-JUL-2023
DEFINITION Nippostrongylus brasiliensis hypothetical protein protein.
ACCESSION CP130735-1256
PROTEIN_ID WKY04430.1
SOURCE Nippostrongylus brasiliensis
ORGANISM Nippostrongylus brasiliensis
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
Rhabditina; Rhabditomorpha; Strongyloidea; Heligmosomidae;
Nippostrongylus.
REFERENCE 1 (bases 1 to 50441521)
AUTHORS Schwarz,E.M., Baniya,A., Rodriguez,I.M., Lu,D., Bobardt,S.D.,
Anesko,K., Baker,L., Gouil,Q., Ritchie,M.E., Jex,A.R., Nair,M.G.
and Dillman,A.R.
TITLE A Nippostrongylus brasiliensis chromosomal reference genome and its
transcriptomics
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 50441521)
AUTHORS Schwarz,E.M., Baniya,A., Rodriguez,I.M., Lu,D., Bobardt,S.D.,
Anesko,K., Baker,L., Gouil,Q., Ritchie,M.E., Jex,A.R., Nair,M.G.
and Dillman,A.R.
TITLE Direct Submission
JOURNAL Submitted (16-JUL-2023) Molecular Biology and Genetics, Cornell
University, Biotechnology Bldg., 526 Campus Road, Ithaca, NY 14853,
USA
COMMENT ##Genome-Assembly-Data-START##
Assembly Date :: 03-JUN-2022
Assembly Method :: raven v. 1.7.0; sourmash v. MAR-2022;
racon v. 1.4.20; POLCA (in MaSuRCA) v.
4.0.8; 3d-dna v. 180419
Assembly Name :: Nippo_1.0
Genome Representation :: Full
Expected Final Version :: Yes
Genome Coverage :: 76.0x
Sequencing Technology :: Oxford Nanopore PromethION; Illumina
HiSeq; Omni-C
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Nippostrongylus brasiliensis"
/mol_type="genomic DNA"
/strain="MIMR"
/db_xref="taxon:27835"
/chromosome="IV"
/sex="pooled male and female"
/tissue_type="Whole animal"
/dev_stage="Adults"
/geo_loc_name="USA: Laboratory of Meera Nair, UC Riverside
School of Medicine, Riverside, CA"
/collection_date="2021/2022"
protein /locus_tag="Q1695_005437"
/note="NIPPO_CHRIV.G9277.T1"
intron_pos 35:2 (1/26)
intron_pos 57:0 (2/26)
intron_pos 83:1 (3/26)
intron_pos 130:0 (4/26)
intron_pos 169:0 (5/26)
intron_pos 189:0 (6/26)
intron_pos 219:0 (7/26)
intron_pos 266:0 (8/26)
intron_pos 319:2 (9/26)
intron_pos 376:1 (10/26)
intron_pos 428:0 (11/26)
intron_pos 465:0 (12/26)
intron_pos 514:0 (13/26)
intron_pos 564:0 (14/26)
intron_pos 622:2 (15/26)
intron_pos 665:0 (16/26)
intron_pos 688:1 (17/26)
intron_pos 707:0 (18/26)
intron_pos 796:0 (19/26)
intron_pos 820:0 (20/26)
intron_pos 846:2 (21/26)
intron_pos 870:0 (22/26)
intron_pos 892:2 (23/26)
intron_pos 921:2 (24/26)
intron_pos 949:0 (25/26)
intron_pos 977:0 (26/26)
BEGIN
1 MPGSEFIRVT ARIRPSASTT PQERIVDVTD SKNLCFNSRS PKYFTYDAVF DENVTQEQVF
61 DELGSRIIDG CVNGFNGTIF AYGQTGSGKT HTMLGPSNIE NFLSSSLHRG LIPRACEALF
121 ARLCTKAAEM GEHFKYEVTC KFVELYNEEF YDLLSNSQQK LTIRSDSKVV QLLGVSEHPV
181 ESSVDMMRIL ELGWESRRTA ETAMNRESSR SHAIFIIDVK TEELVNTIVK KKTATLNLVD
241 LAGSERQTQA KTIGDRFKEA ININSSLSVL GRVIRILSGA NRGDKHIPYR ESKLTHILRD
301 SLGGNSKTAV IVNIHPDIGY YSDTLSTLQF SAECRKIENR VHANEDLTGD TVMAYKSEIN
361 RLREELETVE GRIRNEMEAK VASLEQELQS WKEAAVSREK QLVEAQLHRD VLAAQIMSRA
421 SGEGDAKSYD DMMNAMVTQL TARIDAVKTL EDLSRVQLED DLSNVYRELD IMKQRCESAE
481 AARKIQSEKL KSLLEGYDDT LSGSPLRRLN LNTPGRQSSS FKTPKDRKKR RETMFTPGRN
541 NPDRMSRAFR PVLFDDSTDE SQENIEQDED MKEERELLRL EMDNNRLKQI VAEKEATIEE
601 ICESQKAQAK QWIEEKKQYL ERTSSLNSQI EQLMVDKGEL VKNAEETRQK WEILSAKISA
661 SNDEKCRLEQ EIDQLQAEKF EIEERLQEVL NEQEHYLMEK RTYADLRVVN SGLSNELAEV
721 RRKCASLESK CSAEEYEKRR LQDHLGGVQG ENCKLKNSLR VAEEAIQTSR ADVERANEQV
781 AKLVEEKQTE HNSLQETKAT LKKMREENSD LLHNNDRLKR ELEQLREKTN CMDRDFAEEI
841 GKLKRRYAND ISNVEGLVEM ERNAHEMTKK QFTDFRDQTQ QTFDQKIAEI RESYSNKEKR
901 LTTDMSDKES QIMRLQAEKE TLLEKVNELN TARQVLEKTQ DELDRTKREL TLLKEKNEED
961 DRAIAALAGH QNHRQKVSYL DKIRLENFHL KQQVAELEAS LKRCQGGRTA PRPAPAPRGP
1021 STRSRSARGA V
//