LOCUS WKY04229.1 972 aa PRT INV 31-JUL-2023
DEFINITION Nippostrongylus brasiliensis hypothetical protein protein.
ACCESSION CP130735-1053
PROTEIN_ID WKY04229.1
SOURCE Nippostrongylus brasiliensis
ORGANISM Nippostrongylus brasiliensis
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
Rhabditina; Rhabditomorpha; Strongyloidea; Heligmosomidae;
Nippostrongylus.
REFERENCE 1 (bases 1 to 50441521)
AUTHORS Schwarz,E.M., Baniya,A., Rodriguez,I.M., Lu,D., Bobardt,S.D.,
Anesko,K., Baker,L., Gouil,Q., Ritchie,M.E., Jex,A.R., Nair,M.G.
and Dillman,A.R.
TITLE A Nippostrongylus brasiliensis chromosomal reference genome and its
transcriptomics
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 50441521)
AUTHORS Schwarz,E.M., Baniya,A., Rodriguez,I.M., Lu,D., Bobardt,S.D.,
Anesko,K., Baker,L., Gouil,Q., Ritchie,M.E., Jex,A.R., Nair,M.G.
and Dillman,A.R.
TITLE Direct Submission
JOURNAL Submitted (16-JUL-2023) Molecular Biology and Genetics, Cornell
University, Biotechnology Bldg., 526 Campus Road, Ithaca, NY 14853,
USA
COMMENT ##Genome-Assembly-Data-START##
Assembly Date :: 03-JUN-2022
Assembly Method :: raven v. 1.7.0; sourmash v. MAR-2022;
racon v. 1.4.20; POLCA (in MaSuRCA) v.
4.0.8; 3d-dna v. 180419
Assembly Name :: Nippo_1.0
Genome Representation :: Full
Expected Final Version :: Yes
Genome Coverage :: 76.0x
Sequencing Technology :: Oxford Nanopore PromethION; Illumina
HiSeq; Omni-C
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Nippostrongylus brasiliensis"
/mol_type="genomic DNA"
/strain="MIMR"
/db_xref="taxon:27835"
/chromosome="IV"
/sex="pooled male and female"
/tissue_type="Whole animal"
/dev_stage="Adults"
/geo_loc_name="USA: Laboratory of Meera Nair, UC Riverside
School of Medicine, Riverside, CA"
/collection_date="2021/2022"
protein /locus_tag="Q1695_005309"
/note="NIPPO_CHRIV.G9149.T3"
intron_pos 32:2 (1/22)
intron_pos 51:0 (2/22)
intron_pos 83:2 (3/22)
intron_pos 93:2 (4/22)
intron_pos 142:0 (5/22)
intron_pos 176:2 (6/22)
intron_pos 219:0 (7/22)
intron_pos 251:1 (8/22)
intron_pos 285:2 (9/22)
intron_pos 344:1 (10/22)
intron_pos 363:2 (11/22)
intron_pos 380:0 (12/22)
intron_pos 409:2 (13/22)
intron_pos 436:1 (14/22)
intron_pos 498:0 (15/22)
intron_pos 504:1 (16/22)
intron_pos 555:2 (17/22)
intron_pos 607:1 (18/22)
intron_pos 642:0 (19/22)
intron_pos 682:0 (20/22)
intron_pos 724:0 (21/22)
intron_pos 805:1 (22/22)
BEGIN
1 MLLRFKRSIW VLLQSIFVFG QTTVSSVEGW LRSAEEEKRL IVAAPDGIMK ISPIDDLEKA
61 HDDKLVKKLH ATTTDEILTE IGLLNPHSIF MILLNPHSIF MILSMAFLWF LSAMPTMSPA
121 YMSPPTSACG ENCTFQTVQK EFDLQQSLFD PGEMTSSVYF LGNLMLGQMY CMAADRMGRR
181 PVLVWSLIVS GIAGVVSAFS PTFYLMLLGR FVQGSFFNSI TMVNWVMCCE SIAFKGHSYA
241 SVLFGIFWVA GYCVVTPIAL LLPSWRAVQF VTSIPTLLFG VVMLVLLPES FGFLVTKKKL
301 YEAEAWIRRS HRWGGRRIEC DVQKTIENET ARVSDEKSLR ESLYHVFHDS TLLLYMGIQT
361 VLWVVDFMVY NALSLTSTDV IKGDANTSFV FSGLVELPCY FLMPIALDRL GRRPTVVLSH
421 LLSAAALSFM CFLNAEDDPT TYLIVWLIAK FGMASAFMCC FVYGSEIFPV QYRNICLGFC
481 ATLSNVGAML SPHCNVLDHF FSGGLNVSDV PYHLKKNFDE NKLILPASRE FGEQFYTNVT
541 TQAFSAVIRS LTQERIKLVP RKARFKAEGC FGATRNFDDE AKCFVELLEM VRQVKQRRRH
601 KVLRRVGARL VVSATGSEVG NKTVRILSPR IGSAGRDENK EVSVLSPNIA LNTNSGDTEK
661 DALLELLLEV SGATHGMREA LDRLKANETP AMTKADVEKT LGKKERQKID VIQAMEKTYS
721 AKQMESFKNR GFAFMTGYQR RLVYGKASPY HDEVVLRRTR GLQPAQLERK LINLIRLEAM
781 GKSDYNRRMK YDLINAPTIN SVFVNAPLTN VNSIFSPVLL SAFITSPTLV GPLILSPWLL
841 STLVASPWAL CPIILSPFTF VPIILSPVAM SPFVLSPGVF SPAILSPLLM VPYILSPGVF
901 NPLILSPLLL SPLVLSPTAA APVILSPALL APVVLSPLYH SAVVLSPSLL SPPIGSDGAN
961 VAIILSPDLG ML
//