LOCUS WKY04060.1 1274 aa PRT INV 31-JUL-2023
DEFINITION Nippostrongylus brasiliensis hypothetical protein protein.
ACCESSION CP130735-885
PROTEIN_ID WKY04060.1
SOURCE Nippostrongylus brasiliensis
ORGANISM Nippostrongylus brasiliensis
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
Rhabditina; Rhabditomorpha; Strongyloidea; Heligmosomidae;
Nippostrongylus.
REFERENCE 1 (bases 1 to 50441521)
AUTHORS Schwarz,E.M., Baniya,A., Rodriguez,I.M., Lu,D., Bobardt,S.D.,
Anesko,K., Baker,L., Gouil,Q., Ritchie,M.E., Jex,A.R., Nair,M.G.
and Dillman,A.R.
TITLE A Nippostrongylus brasiliensis chromosomal reference genome and its
transcriptomics
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 50441521)
AUTHORS Schwarz,E.M., Baniya,A., Rodriguez,I.M., Lu,D., Bobardt,S.D.,
Anesko,K., Baker,L., Gouil,Q., Ritchie,M.E., Jex,A.R., Nair,M.G.
and Dillman,A.R.
TITLE Direct Submission
JOURNAL Submitted (16-JUL-2023) Molecular Biology and Genetics, Cornell
University, Biotechnology Bldg., 526 Campus Road, Ithaca, NY 14853,
USA
COMMENT ##Genome-Assembly-Data-START##
Assembly Date :: 03-JUN-2022
Assembly Method :: raven v. 1.7.0; sourmash v. MAR-2022;
racon v. 1.4.20; POLCA (in MaSuRCA) v.
4.0.8; 3d-dna v. 180419
Assembly Name :: Nippo_1.0
Genome Representation :: Full
Expected Final Version :: Yes
Genome Coverage :: 76.0x
Sequencing Technology :: Oxford Nanopore PromethION; Illumina
HiSeq; Omni-C
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Nippostrongylus brasiliensis"
/mol_type="genomic DNA"
/strain="MIMR"
/db_xref="taxon:27835"
/chromosome="IV"
/sex="pooled male and female"
/tissue_type="Whole animal"
/dev_stage="Adults"
/geo_loc_name="USA: Laboratory of Meera Nair, UC Riverside
School of Medicine, Riverside, CA"
/collection_date="2021/2022"
protein /locus_tag="Q1695_005212"
/note="NIPPO_CHRIV.G9052.T1"
intron_pos 32:0 (1/25)
intron_pos 61:0 (2/25)
intron_pos 85:0 (3/25)
intron_pos 108:2 (4/25)
intron_pos 153:0 (5/25)
intron_pos 429:0 (6/25)
intron_pos 518:0 (7/25)
intron_pos 583:0 (8/25)
intron_pos 614:0 (9/25)
intron_pos 649:2 (10/25)
intron_pos 685:1 (11/25)
intron_pos 704:1 (12/25)
intron_pos 726:1 (13/25)
intron_pos 746:1 (14/25)
intron_pos 766:1 (15/25)
intron_pos 796:1 (16/25)
intron_pos 848:1 (17/25)
intron_pos 868:1 (18/25)
intron_pos 899:1 (19/25)
intron_pos 945:0 (20/25)
intron_pos 969:1 (21/25)
intron_pos 995:1 (22/25)
intron_pos 1019:1 (23/25)
intron_pos 1155:2 (24/25)
intron_pos 1240:2 (25/25)
BEGIN
1 MDEAKEELEA ALLQAKQHCV DIQQKVWDHE KQGLRPHEDL YVRRYIYGVT IARKSRFFNG
61 YRPSDVPRSK SLTRIFMEQR YHRSKSTPPL LQKRERSEPK VKIWDSSDGL STKVEFTETV
121 DESSVRDMID NDKQECDELG RKLPVDKRNW EHVSDEIAQK GALLRIGEHL YGFDGIRDLS
181 FQAAADVDRF FGRDPSPDLM FASPYHLLKD YLEEYENRFF KNSLSRSAHD LSEWRKRSSE
241 TQAAVVGSSI SVGDHLEQAP DVQSQTGYNA YRTETNVQNE SHSHSSVLQK AIGTVREWRN
301 ALEDSVSQRI SDRTSRHGSE PAINHSHHTS YSFDYGTPKF QTTAPFECHH HLVRDLEDSA
361 SETALLCDVD VQPIAPGLQS EGSIRSMTSS KASTTAGSLP GDHDFSEGIQ TPISTYSDAF
421 EHDDATSERS SHFAGDHRGT HLVRHIGDHL IDKVHSTLNV GGHVKSGNET MTITKTMMMD
481 SEENAPRDED YSDSETLRVQ SSVDHSDSED TIVANNDVDP VGVLRPTAEL EESHLSLHVS
541 SVPCQSVWEQ KIGSKAEEAE SLLRDVHRTH NALQEQIDLY DADIQDIRSS RERIYDTVAA
601 DPEHIYDPVA DAGLHHARGA LVMSQPVQRP LAVTPPSYDA TVPAIPAYSS PITDVLHYAE
661 GELGTQQRLY QDDENIYEEI GAPQTAPPKI GQGVTHIPEP EYAVPPSIGE GVTACDKHIK
721 EPEYAVPPAI GEGAVAAAVA EPEYAAPRIG EGAMGITEVS QLHYADTNLN DLNANIDKNH
781 STIESRIFRK KNDSQRKQTP YQSSDFFHAE LIHIDEHGEI STGEHGGKLN RSLGRKHQII
841 HDIDEERNFS SEKRICPTET FENAKPIPSP TFQKLQHQYT PEDVPHGKAP SPVPPPNSEY
901 DMNKYVDVDV DAAAAAQDKL DRETVLATVE IRRMSRTNQW TEGGSRDFDH GPLSPSSPML
961 SPKVVISPKK TTGLRSPTAA RRSASSERQE IVHSHQYNER SFGKRESQQP HRGIEKSTAI
1021 FDEYTFEGLP TTMEFPVTKG KFVRETSPTP KTRHSIGTGA VATTATSIGK GVEKPTPVIG
1081 TGAAVGGSVT VVGSGVDLLK RSPELEDIKP MAPTKPAPIG GGVTSTTTTV GSTVASPSTP
1141 TFQKGFVHEM ARRYEQTHGN ETAKTPQRSS SPKIKLSDRQ WRSQGTLIGS GVSVVAPTRG
1201 TTAKVSVQEK VRILERAATH GELQPDIVHV EESREQKRQR MVSIGTPESI NLDEIDLPRR
1261 SPSRSNSRAQ ASAG
//