LOCUS WKY03985.1 1731 aa PRT INV 31-JUL-2023
DEFINITION Nippostrongylus brasiliensis hypothetical protein protein.
ACCESSION CP130735-810
PROTEIN_ID WKY03985.1
SOURCE Nippostrongylus brasiliensis
ORGANISM Nippostrongylus brasiliensis
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
Rhabditina; Rhabditomorpha; Strongyloidea; Heligmosomidae;
Nippostrongylus.
REFERENCE 1 (bases 1 to 50441521)
AUTHORS Schwarz,E.M., Baniya,A., Rodriguez,I.M., Lu,D., Bobardt,S.D.,
Anesko,K., Baker,L., Gouil,Q., Ritchie,M.E., Jex,A.R., Nair,M.G.
and Dillman,A.R.
TITLE A Nippostrongylus brasiliensis chromosomal reference genome and its
transcriptomics
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 50441521)
AUTHORS Schwarz,E.M., Baniya,A., Rodriguez,I.M., Lu,D., Bobardt,S.D.,
Anesko,K., Baker,L., Gouil,Q., Ritchie,M.E., Jex,A.R., Nair,M.G.
and Dillman,A.R.
TITLE Direct Submission
JOURNAL Submitted (16-JUL-2023) Molecular Biology and Genetics, Cornell
University, Biotechnology Bldg., 526 Campus Road, Ithaca, NY 14853,
USA
COMMENT ##Genome-Assembly-Data-START##
Assembly Date :: 03-JUN-2022
Assembly Method :: raven v. 1.7.0; sourmash v. MAR-2022;
racon v. 1.4.20; POLCA (in MaSuRCA) v.
4.0.8; 3d-dna v. 180419
Assembly Name :: Nippo_1.0
Genome Representation :: Full
Expected Final Version :: Yes
Genome Coverage :: 76.0x
Sequencing Technology :: Oxford Nanopore PromethION; Illumina
HiSeq; Omni-C
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Nippostrongylus brasiliensis"
/mol_type="genomic DNA"
/strain="MIMR"
/db_xref="taxon:27835"
/chromosome="IV"
/sex="pooled male and female"
/tissue_type="Whole animal"
/dev_stage="Adults"
/geo_loc_name="USA: Laboratory of Meera Nair, UC Riverside
School of Medicine, Riverside, CA"
/collection_date="2021/2022"
protein /locus_tag="Q1695_005178"
/note="NIPPO_CHRIV.G9018.T1"
intron_pos 47:0 (1/36)
intron_pos 119:1 (2/36)
intron_pos 191:1 (3/36)
intron_pos 255:2 (4/36)
intron_pos 284:1 (5/36)
intron_pos 342:0 (6/36)
intron_pos 398:0 (7/36)
intron_pos 441:0 (8/36)
intron_pos 486:0 (9/36)
intron_pos 523:0 (10/36)
intron_pos 590:2 (11/36)
intron_pos 619:0 (12/36)
intron_pos 679:0 (13/36)
intron_pos 715:1 (14/36)
intron_pos 767:0 (15/36)
intron_pos 823:0 (16/36)
intron_pos 870:0 (17/36)
intron_pos 897:0 (18/36)
intron_pos 962:0 (19/36)
intron_pos 1019:2 (20/36)
intron_pos 1054:1 (21/36)
intron_pos 1093:0 (22/36)
intron_pos 1143:0 (23/36)
intron_pos 1161:1 (24/36)
intron_pos 1212:0 (25/36)
intron_pos 1263:0 (26/36)
intron_pos 1307:0 (27/36)
intron_pos 1344:0 (28/36)
intron_pos 1395:1 (29/36)
intron_pos 1450:1 (30/36)
intron_pos 1512:2 (31/36)
intron_pos 1555:0 (32/36)
intron_pos 1605:0 (33/36)
intron_pos 1629:0 (34/36)
intron_pos 1665:0 (35/36)
intron_pos 1693:0 (36/36)
BEGIN
1 MRRLLVVVRL LIGLLVALDD DGHIISAQHF YYSKNSINNV ILEDGKVFVG AVNELAALSE
61 EELLPLHSIS TGPVRDSPLC SVDGSSCLKD AVLRDTDNHN KVLQLLPNGL LHCGSVRQGI
121 CSFHSRQNLS LTVQGDLPVA AISPTASCVS LTLSPSLLAV AVSHSVDSPY REPFPAVALR
181 ELPELSVVNA GSLEGEAAVF LRAELRSSFS VRYLNMFHYQ HYVFIAAVQA QDTRQTRTAA
241 PMVAKLLRIC DNDTRFISYS EVELQCRSED NSNFPHMTAA FLLGDFLVGA FASSPSGKKS
301 AICLFSMQRL KLTFWYNIDR CRGGADSIGL PHIGRDSKCI NKSRIPLDEE TCELGVGGSI
361 EAVEIAVAEV EAKITSLGGV SQPRILLAGT DDGRILQFKS KSPAQLEEYD RRNVGDGRMG
421 FRVQQLIIRH ATVFAVLPKG IVSLPLSSCH TVTSCSACIS SPDPMCQWCT AVGKCTTANL
481 CPSATASVCP LQNGPPSPTS LSVDDIRNIT LPVKHLPQPD GFSYVCVFGS ASSPASWTVD
541 GVSCGLPVLR SSAADLPPSI TDSLALSTSI SSYRIVEHNF TVYNCGAFMT CSSCSSSETG
601 CDWCISSHKC VSSGKCAEDK ATECVHINRS TEIMIPKGSS HEISFPVAHL DRLPKESNYR
661 CRVTVNGTVT ESTARLSETM VKCEAMKLNY PDLLANISAP LEFIHDNDVI DRTEVSIYSC
721 SLLAGDCSSC VFASARWGCS WCSGRCSHDC PQPSEDVICD RPQIVSFSPS SGPVEGGTVI
781 TIHGRDLGSS IEDVRDRVFV GGSRCPVIDY EISKKIVCRV EKGTSSGPIR VTVGKTGSRT
841 AESSQLYSFV ETSVFSAYPP YAPVSGGTKI ILYGHNVDAG SAVQVTIGEV PCGDVTRNSS
901 SSLTCVVARA VAPTKLAQVT VNIDGSSMNV PGTFEFRPDP TVSSIYPLVT FKSGGRMVTV
961 EGANFDSVLS ARMFFVSSTS PPFEVVSKPS TCQIQNATFM FCLTPELLAG PHLRTSYSRF
1021 PVGFAMDNVT LVRNLGHRIQ MRVVPDPEFA PFKGQPIVGG LPLVSVTVGR LRSELGLIEY
1081 VDPIATLRLW VLVVTALTAL CSLLVLLAFL WKKRRVERER DYRKIQMQME HLESNVRKEC
1141 KQAFAELQTS MESCGDDEYE GMDVATFMEF LHRLLWEDNG WSHSPSLYAS TLPVTLAQFD
1201 ALLSSRQFVF SIVETAESEP TMSLSEKSML SSLLIAVLLR NFHYCTDVVL SLLRAHIAKS
1261 VHAGNSELLF RKSDSVVEKM VAKWLTICLY DSISQYQANK YSTLFKALKY QTERGPVDAV
1321 TGNARYTINE AKLLREIVDC SSVDCLVTTL DGRGPFTVKA IACDTISQLK QKILDHLYKR
1381 TAHSQRPALA SFDLELVSTS RGRMLLSDWS GPQSSMKGPT KLNTLSHYGI SSQSHIVMIP
1441 AEKSSGNYRS SLADSGKSSW SSLDRSSPVY PPNRFCHLSS PSRTLTMEKR KKIDESIPKS
1501 IPEVYLTRLL TSKGTVQKYI EDFMESILFL EMSTYPPILK RVFDLLEEEA ARNGVSDHRL
1561 VQQWKSNLYI LRVWVHLIKN PKILLDVSDS VSQDGNLSVV AQTLMDCFSF TEQSLGAHSP
1621 SSRLLFAKEV ARLRPLSSDL FRRIRRQPPV TDEMFADSLN EVANDLRECT RSTVALSELL
1681 TWVRGNGVRL VEVLSADEVC TAQRLPSRLS QVINLSLDPA EHIYSTILDE A
//