LOCUS WKY03771.1 2176 aa PRT INV 31-JUL-2023
DEFINITION Nippostrongylus brasiliensis hypothetical protein protein.
ACCESSION CP130735-595
PROTEIN_ID WKY03771.1
SOURCE Nippostrongylus brasiliensis
ORGANISM Nippostrongylus brasiliensis
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
Rhabditina; Rhabditomorpha; Strongyloidea; Heligmosomidae;
Nippostrongylus.
REFERENCE 1 (bases 1 to 50441521)
AUTHORS Schwarz,E.M., Baniya,A., Rodriguez,I.M., Lu,D., Bobardt,S.D.,
Anesko,K., Baker,L., Gouil,Q., Ritchie,M.E., Jex,A.R., Nair,M.G.
and Dillman,A.R.
TITLE A Nippostrongylus brasiliensis chromosomal reference genome and its
transcriptomics
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 50441521)
AUTHORS Schwarz,E.M., Baniya,A., Rodriguez,I.M., Lu,D., Bobardt,S.D.,
Anesko,K., Baker,L., Gouil,Q., Ritchie,M.E., Jex,A.R., Nair,M.G.
and Dillman,A.R.
TITLE Direct Submission
JOURNAL Submitted (16-JUL-2023) Molecular Biology and Genetics, Cornell
University, Biotechnology Bldg., 526 Campus Road, Ithaca, NY 14853,
USA
COMMENT ##Genome-Assembly-Data-START##
Assembly Date :: 03-JUN-2022
Assembly Method :: raven v. 1.7.0; sourmash v. MAR-2022;
racon v. 1.4.20; POLCA (in MaSuRCA) v.
4.0.8; 3d-dna v. 180419
Assembly Name :: Nippo_1.0
Genome Representation :: Full
Expected Final Version :: Yes
Genome Coverage :: 76.0x
Sequencing Technology :: Oxford Nanopore PromethION; Illumina
HiSeq; Omni-C
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Nippostrongylus brasiliensis"
/mol_type="genomic DNA"
/strain="MIMR"
/db_xref="taxon:27835"
/chromosome="IV"
/sex="pooled male and female"
/tissue_type="Whole animal"
/dev_stage="Adults"
/geo_loc_name="USA: Laboratory of Meera Nair, UC Riverside
School of Medicine, Riverside, CA"
/collection_date="2021/2022"
protein /locus_tag="Q1695_005043"
/note="NIPPO_CHRIV.G8883.T2"
intron_pos 28:1 (1/58)
intron_pos 59:0 (2/58)
intron_pos 91:1 (3/58)
intron_pos 108:0 (4/58)
intron_pos 155:1 (5/58)
intron_pos 201:0 (6/58)
intron_pos 261:0 (7/58)
intron_pos 295:0 (8/58)
intron_pos 315:1 (9/58)
intron_pos 371:1 (10/58)
intron_pos 393:1 (11/58)
intron_pos 427:0 (12/58)
intron_pos 457:1 (13/58)
intron_pos 495:2 (14/58)
intron_pos 536:0 (15/58)
intron_pos 584:0 (16/58)
intron_pos 632:1 (17/58)
intron_pos 660:2 (18/58)
intron_pos 696:1 (19/58)
intron_pos 724:1 (20/58)
intron_pos 762:0 (21/58)
intron_pos 795:0 (22/58)
intron_pos 816:1 (23/58)
intron_pos 854:0 (24/58)
intron_pos 880:1 (25/58)
intron_pos 912:0 (26/58)
intron_pos 946:1 (27/58)
intron_pos 982:0 (28/58)
intron_pos 1005:0 (29/58)
intron_pos 1052:0 (30/58)
intron_pos 1079:0 (31/58)
intron_pos 1106:0 (32/58)
intron_pos 1135:1 (33/58)
intron_pos 1159:1 (34/58)
intron_pos 1209:1 (35/58)
intron_pos 1241:0 (36/58)
intron_pos 1276:2 (37/58)
intron_pos 1306:1 (38/58)
intron_pos 1363:1 (39/58)
intron_pos 1394:1 (40/58)
intron_pos 1433:0 (41/58)
intron_pos 1455:1 (42/58)
intron_pos 1477:1 (43/58)
intron_pos 1512:1 (44/58)
intron_pos 1546:0 (45/58)
intron_pos 1575:1 (46/58)
intron_pos 1613:2 (47/58)
intron_pos 1658:0 (48/58)
intron_pos 1700:0 (49/58)
intron_pos 1761:1 (50/58)
intron_pos 1792:0 (51/58)
intron_pos 1853:0 (52/58)
intron_pos 1910:1 (53/58)
intron_pos 1995:0 (54/58)
intron_pos 2064:2 (55/58)
intron_pos 2096:2 (56/58)
intron_pos 2133:0 (57/58)
intron_pos 2165:2 (58/58)
BEGIN
1 MRLFLLAACL VCALASRPLD EHESVKKVLR TWLADKQVEI VDHPESPREL RAVAAVAEGS
61 HGLAQQLDAN KLSVSRSCNT PGYTGEFCEF PICYETNPTL PPVMEEETVA IDASTLANCT
121 QQYVVYVDES MYAVSIDIEM DSPLNPTFTL QGEDGSVANP DLLTQTRDHV EAVFGYLPPG
181 RYLVIPSADL KTTSCVLSVR ARTSITVTGG FLLGEGTASE RSDYPQKYTY YQQLASVVVH
241 ANSLRSPAKL QSINFIGEEN TMYRPRLLST RYNCSYEYIF ESFFCKSTGS YLYQVEGVSF
301 QGFTFRRLFP FSCLVNPATT AAPPSTVAPT EPAKCKNNGI FVKNLDGSTY CYCLGLYTGA
361 DCGTRVCANG GTPDSNGKCM CAAGFMGEFC ENVYCTDNTG LAFDAEHPTL TLVIRTRQQL
421 SDVIAQVSRA VQTMVNDLTF DPDYLRRYVL VLFNNNKATT NSYPDSISLL DALSAAAKTT
481 DTSGGCSDVT FNALSAALSQ YLTYKSPVYV ITDAVPSDGS EVDNVYHLAN DWRSPIHFIY
541 LEPKTASGCK ADIEDSAYRL MDTVAQRSSG QTFYFQDYSK IETFLTQHFV NTIYRTQLLL
601 SNDLPVCSDQ LVYKAVSVDV TVQMFVIVAT GRNISLVLTN PDGEFAKSDV AYTDGINNIW
661 VYNGPYTGNW LFNIRSSGST QACNFKVFQS VYHTPGTRDN QMDLFWSTSA DLDSDVGLNQ
721 PLVGFEHAFV MHLTNYPVAV PPERVQAFLT ITANRGGQTT QVYASNGIWR DLCSYNFYFP
781 PFACKIPNEI LYYNFYAQDL YGFAVQRAGV MYCAEIPPPP TQTSGCQNGG VMNAANTTCF
841 CPPGFTGDFC TQVECYNGGK YVGNQCSCQI GWTGTFCEIP KCIDKGISPE FMMNYVDMVF
901 MVELTAQAHA QVVSLNQQFA DLIRDVQAQS QTWINRFYLV GYNSTWADVL AVSPSSDPHE
961 VIDTLNRIAG TIPTDTGCKV QLWQAFIKML QWNIPAGSFV QIFQTSPEND GNLDTVAEIY
1021 DAMRALYINI NGFLSYTPTF KPNGFACNAT QIDYETVFAM VGGSDGTVYP VQPGNIQDIA
1081 QIIPLLYSSG QVYGQWSFQC KTPMQVYFPI DAYTQTIQLN TFGYNKKMQV FDANGNVVQG
1141 YSLVSDAYSG WDILEIRKDC DAGWDKAGQY CLQFVINQKS FADAQRHCHE AGGNLVDDLN
1201 DGKHQFIASV AHGFSFWLGL YNNNGTGYVW DRPDGVAPLP LNQNQQYWNG GGAAPPYDPK
1261 AACVFWDGST TNTNTWTLGN CNTALPFLCQ KHQYDKDHRP NVIGDDDLPA GKWSMSISVN
1321 PAAGQMEVCS VAIKVQSSLQ LITGFATDVY TDTPYLDPIG DSQTNRLISY LHSLDNAHRT
1381 PILTHSLLYD AYNGTFYNAA TYNARVGCSF PWVSQTFPCP NGQNDANEFF IAHIGEDEFG
1441 NMFQRATLAH CNKADLSCGS GGVRYNGTCV CTEYWTGRFC TVPICVNGGV RSTTTNQCVC
1501 PKGYTGPNCQ LEECTSPSPV KFTTDAKSLV FAIEVTKPTL DAVKGLVSQL SAIVSNATAV
1561 HPNWFANYVL VTFDSTGPSA PATFSSINAL VMSLNSAVSR ATDAGGCSLP IYKALTNALS
1621 QKVAYPNSEL FLITAATPGD NTAKQAGLEE ISDTQAHVNY IYLTSAACTP SDAAMNPMVQ
1681 TAYTSGGNVA FVDSTNLNSY LNAYLATLYG SSVLSNPTFH SNYDCSTPRN WYVQVDMLTT
1741 AIYVSSTSQY GSLGVIDPLN QDMAPKVLYN AGRTKLYEID ADRLPGIYTL TVTSPGSCYV
1801 HVYSAGGAKV FSEFATTTTN DPLGSHQDGS VPHPSTGGLT QFPKIRDIFN KQVMLRSPLY
1861 RRGMCSFEYY SDPFVCQSQS LEFMVIGMDE FNQQFRRLEQ FFCVSHNDTT RTTVPSPVVS
1921 TTPYKPVVTT QPVVTTMTTQ PVVTTNPPPV TTQPAPVMST SPSDHLTTPA VSSGLFDVVF
1981 LIDVSQEAST RLSDMNNFVS SLMSGFIVSQ QNSRVALIAV GSVGMGAVPV ANLNTIGSQA
2041 DLLKYLQIVV DFSDFGSPGQ ALAQALGIAV DNNFMSAGYR TTITNHVIVY VTATTKFDDN
2101 PAPVATKILQ AGSYGIITVG YGQLATDKAA LQSISGGSSC TFTASDSATL NAQITSVRNL
2161 ITVAGTNGGK YCNGGN
//