LOCUS WKY03742.1 1231 aa PRT INV 31-JUL-2023
DEFINITION Nippostrongylus brasiliensis hypothetical protein protein.
ACCESSION CP130735-567
PROTEIN_ID WKY03742.1
SOURCE Nippostrongylus brasiliensis
ORGANISM Nippostrongylus brasiliensis
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
Rhabditina; Rhabditomorpha; Strongyloidea; Heligmosomidae;
Nippostrongylus.
REFERENCE 1 (bases 1 to 50441521)
AUTHORS Schwarz,E.M., Baniya,A., Rodriguez,I.M., Lu,D., Bobardt,S.D.,
Anesko,K., Baker,L., Gouil,Q., Ritchie,M.E., Jex,A.R., Nair,M.G.
and Dillman,A.R.
TITLE A Nippostrongylus brasiliensis chromosomal reference genome and its
transcriptomics
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 50441521)
AUTHORS Schwarz,E.M., Baniya,A., Rodriguez,I.M., Lu,D., Bobardt,S.D.,
Anesko,K., Baker,L., Gouil,Q., Ritchie,M.E., Jex,A.R., Nair,M.G.
and Dillman,A.R.
TITLE Direct Submission
JOURNAL Submitted (16-JUL-2023) Molecular Biology and Genetics, Cornell
University, Biotechnology Bldg., 526 Campus Road, Ithaca, NY 14853,
USA
COMMENT ##Genome-Assembly-Data-START##
Assembly Date :: 03-JUN-2022
Assembly Method :: raven v. 1.7.0; sourmash v. MAR-2022;
racon v. 1.4.20; POLCA (in MaSuRCA) v.
4.0.8; 3d-dna v. 180419
Assembly Name :: Nippo_1.0
Genome Representation :: Full
Expected Final Version :: Yes
Genome Coverage :: 76.0x
Sequencing Technology :: Oxford Nanopore PromethION; Illumina
HiSeq; Omni-C
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Nippostrongylus brasiliensis"
/mol_type="genomic DNA"
/strain="MIMR"
/db_xref="taxon:27835"
/chromosome="IV"
/sex="pooled male and female"
/tissue_type="Whole animal"
/dev_stage="Adults"
/geo_loc_name="USA: Laboratory of Meera Nair, UC Riverside
School of Medicine, Riverside, CA"
/collection_date="2021/2022"
protein /locus_tag="Q1695_005028"
/note="NIPPO_CHRIV.G8868.T3"
intron_pos 4:0 (1/32)
intron_pos 42:0 (2/32)
intron_pos 91:0 (3/32)
intron_pos 144:0 (4/32)
intron_pos 164:0 (5/32)
intron_pos 195:0 (6/32)
intron_pos 253:1 (7/32)
intron_pos 280:0 (8/32)
intron_pos 305:2 (9/32)
intron_pos 348:0 (10/32)
intron_pos 381:1 (11/32)
intron_pos 406:2 (12/32)
intron_pos 468:0 (13/32)
intron_pos 503:1 (14/32)
intron_pos 531:0 (15/32)
intron_pos 587:0 (16/32)
intron_pos 647:0 (17/32)
intron_pos 691:0 (18/32)
intron_pos 720:0 (19/32)
intron_pos 744:2 (20/32)
intron_pos 783:1 (21/32)
intron_pos 810:2 (22/32)
intron_pos 872:0 (23/32)
intron_pos 927:0 (24/32)
intron_pos 974:0 (25/32)
intron_pos 1004:0 (26/32)
intron_pos 1027:2 (27/32)
intron_pos 1076:1 (28/32)
intron_pos 1104:0 (29/32)
intron_pos 1143:0 (30/32)
intron_pos 1177:2 (31/32)
intron_pos 1204:2 (32/32)
BEGIN
1 MTQVSSREGY ISENAEIGTT VRVSPNPQAE SLQILVNDED LRPGMPPATY QYILTGPGAT
61 IFAVDQRGYL YLNVASIDAD MPNPSSYKLN IQAREVDTVP VRSSAPVAIT VHLMDVNDNP
121 PQFEFPIYTV NVSSFGDERP VAKVQASDPD SGPFGQISYR IIQVTNGAEG QFRYDNSSNI
181 LYVTGDLTPG ERYQVVIEAT DGGGKSSKAI VVVLATHAQF GLASLAPLPG METFVPNPMA
241 FTMAPNQAAA SAEEEETIQT FVTEVAENTP VNTVVVSLGG DGGNDVYFSI AGGNNEEKFQ
301 INEQTGTITT IGEFDRERTA MYSLQIDTRS RHPDQHLYWT LVQISVLDVN DNSPHFVGAQ
361 PIRLRLSVDD LDQLTANMVI GKVTVEDPDS DDNGRLELRV APDMNRLFSV TNDGVVSING
421 DFTAAHFGEH RIFIIARDHG DPPREAKAEV IVSIFGTLIT VATEPPTSET FEYTNSAEEE
481 PQTQPDYYFQ SITSSPTRGN THTFSAFPSP SPAPPSPTLP TAVVTPDYST VHASYPDGNS
541 GTISYVLHKG DPTLFVVSSY SGSVSLLRPL DAETDTSYVL QVSTAEAAGL AVDPTMAHFV
601 SITVHVGDVN DWIPNFESSS YSFVVQEDTM PGTIIGQVTA FDQDREEPNN RIRYRLVSAG
661 GLESYFAVNP DTGLITLALQ VDAFAGEKIT LRIEASDSGV PSQSSMTSVL IDIVATTSQV
721 IPNGTPFSNR PSEGALQFSL RNYTASVSES VRPPNLVQVL SVNNKPADTR FVSCNIISGN
781 YRGAFSITAG SDGNCELRTQ MELDRETVER YLLNVTVTAG SETDFALVSI TVLDVNDNVP
841 RFIYDNDLGL TTYFAGVSST AGAFTRVLTV KAEDADLGNS SVVNYSLDPL SMHSKYFTVS
901 PTGEISTKQS MTQLLQKSRI SSFEIRVTAC DSPIAGQQLC SKADIVINVI TEAHRFRMIT
961 TGLNPQQLRA HEKDMIKTVR QFTNKCTLLS IESMIEQSSA DNQIRTDVYW YAVDPSTKKI
1021 CKRPEYGKLF ESASVEMVAG KVQPWFRLEN IVEDVEEDGG ASSGILPNNW RSASIMLVGL
1081 AVLIAIGAVV GICTVCVFWS RYKTSQHSVH SFNPHGYPQK LGTVYLPNPP HDPRFDKIYE
1141 TQMLEMPISD EDTTMKSSTL GGGRINIGYG NYGRQGSIAY EGDFSIEENM YALNVPGRMD
1201 PVTKRIQNLV IPTPDYPSAR RSSSQHNKSL L
//