LOCUS WKY03563.1 1530 aa PRT INV 31-JUL-2023
DEFINITION Nippostrongylus brasiliensis hypothetical protein protein.
ACCESSION CP130735-390
PROTEIN_ID WKY03563.1
SOURCE Nippostrongylus brasiliensis
ORGANISM Nippostrongylus brasiliensis
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
Rhabditina; Rhabditomorpha; Strongyloidea; Heligmosomidae;
Nippostrongylus.
REFERENCE 1 (bases 1 to 50441521)
AUTHORS Schwarz,E.M., Baniya,A., Rodriguez,I.M., Lu,D., Bobardt,S.D.,
Anesko,K., Baker,L., Gouil,Q., Ritchie,M.E., Jex,A.R., Nair,M.G.
and Dillman,A.R.
TITLE A Nippostrongylus brasiliensis chromosomal reference genome and its
transcriptomics
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 50441521)
AUTHORS Schwarz,E.M., Baniya,A., Rodriguez,I.M., Lu,D., Bobardt,S.D.,
Anesko,K., Baker,L., Gouil,Q., Ritchie,M.E., Jex,A.R., Nair,M.G.
and Dillman,A.R.
TITLE Direct Submission
JOURNAL Submitted (16-JUL-2023) Molecular Biology and Genetics, Cornell
University, Biotechnology Bldg., 526 Campus Road, Ithaca, NY 14853,
USA
COMMENT ##Genome-Assembly-Data-START##
Assembly Date :: 03-JUN-2022
Assembly Method :: raven v. 1.7.0; sourmash v. MAR-2022;
racon v. 1.4.20; POLCA (in MaSuRCA) v.
4.0.8; 3d-dna v. 180419
Assembly Name :: Nippo_1.0
Genome Representation :: Full
Expected Final Version :: Yes
Genome Coverage :: 76.0x
Sequencing Technology :: Oxford Nanopore PromethION; Illumina
HiSeq; Omni-C
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Nippostrongylus brasiliensis"
/mol_type="genomic DNA"
/strain="MIMR"
/db_xref="taxon:27835"
/chromosome="IV"
/sex="pooled male and female"
/tissue_type="Whole animal"
/dev_stage="Adults"
/geo_loc_name="USA: Laboratory of Meera Nair, UC Riverside
School of Medicine, Riverside, CA"
/collection_date="2021/2022"
protein /locus_tag="Q1695_004932"
/note="NIPPO_CHRIV.G8772.T3"
intron_pos 13:1 (1/42)
intron_pos 58:2 (2/42)
intron_pos 110:1 (3/42)
intron_pos 151:1 (4/42)
intron_pos 192:2 (5/42)
intron_pos 229:1 (6/42)
intron_pos 267:0 (7/42)
intron_pos 308:1 (8/42)
intron_pos 367:1 (9/42)
intron_pos 416:1 (10/42)
intron_pos 458:2 (11/42)
intron_pos 496:1 (12/42)
intron_pos 538:1 (13/42)
intron_pos 558:2 (14/42)
intron_pos 596:1 (15/42)
intron_pos 645:1 (16/42)
intron_pos 674:0 (17/42)
intron_pos 704:1 (18/42)
intron_pos 751:1 (19/42)
intron_pos 774:2 (20/42)
intron_pos 823:0 (21/42)
intron_pos 864:1 (22/42)
intron_pos 916:1 (23/42)
intron_pos 936:0 (24/42)
intron_pos 968:1 (25/42)
intron_pos 999:0 (26/42)
intron_pos 1024:1 (27/42)
intron_pos 1049:1 (28/42)
intron_pos 1084:1 (29/42)
intron_pos 1110:0 (30/42)
intron_pos 1136:1 (31/42)
intron_pos 1186:1 (32/42)
intron_pos 1226:2 (33/42)
intron_pos 1248:0 (34/42)
intron_pos 1270:0 (35/42)
intron_pos 1298:1 (36/42)
intron_pos 1345:0 (37/42)
intron_pos 1378:1 (38/42)
intron_pos 1432:1 (39/42)
intron_pos 1473:0 (40/42)
intron_pos 1493:1 (41/42)
intron_pos 1515:1 (42/42)
BEGIN
1 MLIFSLVFAS VTASPSFRWC SAGDNCDSCT IQSAIGAECS GADEGQRTPF QFCNPRTKVI
61 DVDSASYLSC SNGTYRQTTC SDGDRTHFSA ATLECVDPAS MTFFAQGTSG SGRIGDVCSF
121 NTDCLSGMYC VIGHCRCLST YVAVDAYCYE RISPSESGCF YDIQCSAVWP DAYCKSGQCH
181 CPSEDMAAVK TRDGTVCIWT SSTEPSCPLP SLPPPDSAAA MVVLPGPSAR KTVSIASCNP
241 HSSTIPSNEE IFTERAHDFK CAVRGTVTDS SPKDVSDLYD CIDNSRFWQE QGLDTTSHPI
301 GVCCMNRAFT CQQPKKGESE EIGAVPRWWF NGVIGSCQQF LFDPSSADVS PNNFETQDHC
361 ESFCKYTCPR GNPAYISIRA DVGQIPQGGC TTSQPCADPY DCVDVASQSL CCPSRKSICS
421 EAGARVKNAL RGTPYDAGMR FDQLTGEQAN YAIGISTRYY YNPIDGQCHP FTYNGFLGNF
481 NNFHSQADCQ MYCVQLQCGH GSPLTTGQGA PQRCLRDADC PSTHSCAAEH GVCCPTPQML
541 CTEPLRVGDC KQSVKQYWYN AETRTCEGFI YTGCQGNNNR FNSMNECHRF CRNVHAEPKC
601 PHGRAYIDSA GKFLQCGEGF SGEACPANYE CYFDGTIHGC CPSKAYTCSL PVNKGVACGS
661 GSSYRYFYNN NLKECQTFLF LGCDGNSNNF VSVEKCQNYC EIAVCPNGGS PLRSNKKLRS
721 CSASDACPSD YECTQVESNV STQRRCCPTK ASICAKPPNM GLLPKCSGAG SRNRFYFNVA
781 LQTCSPYASN GCDTSLNSFK SRVECEDFCL SAGCRAGDTV YKDPNSNRPF LCNTALHNNC
841 PSNYDCTLNT LTQEHICCGS DDMGVCPIGE KAYIEPSTST PRQCAMIADR KCPSGYLCRF
901 SQNNFKYYCC GSITGSLCPS GRALFRFPET QLPLQCSISK NGGVCPPSFA CQSDVPGAFQ
961 GYCCSQHPIC PGGAEFHLDE RTQMPTTCSR EGFALCPQGF TCQQQPEAKN FYCCAGKESE
1021 GINDGCPPTE FAFVENGSVK SCDPFNAQSN PCPSTYTCQW SVSNQKYQCC GPRPVRQSKP
1081 NAIDDGCPSR QFALLDRRTG QPRICTAGEE KSCAVGFSCQ FSAKRSQFQC CGQSGGCPHR
1141 RAAYVAVDGN VQECLPGPDM CADGYECVRS AYGSGKNICC SKENNDCGNN EVVINGSCTI
1201 QIKIGGSCYR DEECAGGSKC KTNTCSCESD EEVLNDACVP KKCERGQIEV HGKCIQQSGR
1261 GETCSSSAQC ATNLRCLNNK CGCGKGEKIE GGVCVPEDTR KRSQTNCPLA HEHAFFEEGT
1321 TRMRYCSLLA DDCPTFYSCQ YSSLVKQNIC CGEGDLSKKE KSDRKTERPK GTGSVKAGYC
1381 PAVMTPYLLN GKPKSCASSS CPYGFQCRYS TSKMNYYCCS TILTKSAVQR TDGGCKHGSV
1441 LLYPSTQEPV QCDHQMRACP TGYVCLPHSV TKALQCCSLP SSRDRSLSGD DLVECPSYMV
1501 RVTTLRNGRK TSHCAHSCPP GQTARNGVCQ
//