LOCUS WKY03537.1 1080 aa PRT INV 31-JUL-2023
DEFINITION Nippostrongylus brasiliensis hypothetical protein protein.
ACCESSION CP130735-362
PROTEIN_ID WKY03537.1
SOURCE Nippostrongylus brasiliensis
ORGANISM Nippostrongylus brasiliensis
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
Rhabditina; Rhabditomorpha; Strongyloidea; Heligmosomidae;
Nippostrongylus.
REFERENCE 1 (bases 1 to 50441521)
AUTHORS Schwarz,E.M., Baniya,A., Rodriguez,I.M., Lu,D., Bobardt,S.D.,
Anesko,K., Baker,L., Gouil,Q., Ritchie,M.E., Jex,A.R., Nair,M.G.
and Dillman,A.R.
TITLE A Nippostrongylus brasiliensis chromosomal reference genome and its
transcriptomics
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 50441521)
AUTHORS Schwarz,E.M., Baniya,A., Rodriguez,I.M., Lu,D., Bobardt,S.D.,
Anesko,K., Baker,L., Gouil,Q., Ritchie,M.E., Jex,A.R., Nair,M.G.
and Dillman,A.R.
TITLE Direct Submission
JOURNAL Submitted (16-JUL-2023) Molecular Biology and Genetics, Cornell
University, Biotechnology Bldg., 526 Campus Road, Ithaca, NY 14853,
USA
COMMENT ##Genome-Assembly-Data-START##
Assembly Date :: 03-JUN-2022
Assembly Method :: raven v. 1.7.0; sourmash v. MAR-2022;
racon v. 1.4.20; POLCA (in MaSuRCA) v.
4.0.8; 3d-dna v. 180419
Assembly Name :: Nippo_1.0
Genome Representation :: Full
Expected Final Version :: Yes
Genome Coverage :: 76.0x
Sequencing Technology :: Oxford Nanopore PromethION; Illumina
HiSeq; Omni-C
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Nippostrongylus brasiliensis"
/mol_type="genomic DNA"
/strain="MIMR"
/db_xref="taxon:27835"
/chromosome="IV"
/sex="pooled male and female"
/tissue_type="Whole animal"
/dev_stage="Adults"
/geo_loc_name="USA: Laboratory of Meera Nair, UC Riverside
School of Medicine, Riverside, CA"
/collection_date="2021/2022"
protein /locus_tag="Q1695_004919"
/note="NIPPO_CHRIV.G8759.T2"
intron_pos 47:1 (1/26)
intron_pos 67:0 (2/26)
intron_pos 103:0 (3/26)
intron_pos 152:0 (4/26)
intron_pos 214:0 (5/26)
intron_pos 251:0 (6/26)
intron_pos 285:2 (7/26)
intron_pos 350:0 (8/26)
intron_pos 381:0 (9/26)
intron_pos 414:1 (10/26)
intron_pos 447:1 (11/26)
intron_pos 490:0 (12/26)
intron_pos 517:1 (13/26)
intron_pos 564:2 (14/26)
intron_pos 597:2 (15/26)
intron_pos 655:2 (16/26)
intron_pos 702:0 (17/26)
intron_pos 727:0 (18/26)
intron_pos 759:0 (19/26)
intron_pos 801:2 (20/26)
intron_pos 827:2 (21/26)
intron_pos 864:0 (22/26)
intron_pos 892:0 (23/26)
intron_pos 948:0 (24/26)
intron_pos 989:0 (25/26)
intron_pos 1051:1 (26/26)
BEGIN
1 MAGRFRVSSV TAAVGNDVAT PPAATPAQVQ PPTVTLTIPQ NGQTTQDDGA ERIPLCEQHS
61 PLALYEADYD TQGQKIGQML RKLSVYTATE PTSEEADEKP KMATKMGTIM GVFFPCIQNI
121 FGVLFFIRMT WIVGTAGVVQ SFFVVLVCVS VTFLTSISLS AIATNGVVSG GGPYYMISRN
181 LGPELGGAVG ILFYLGTTIA ASMYLTGAVE IFLLYIMPGG KVFESIYNNF RLFGSGLLFL
241 VGMIVLAGVK VVNKFALPLV FVVLCCIFSA FLGAFVRFNG SDQLQFCMMG DRPVDVTTYY
301 ESTHVRPNCT TEGLRPLFCS DNGTCDPYYE RVKNVKVWRG SNLPAIRLER AIKGMGSGVF
361 FDNLWPKHTR AGDVLSKDPR DKSDRQRSTG FYTFADSTTS FMILIGVFFP SATGIMAGSN
421 RSGNLRDASK SIPLGTLAAQ ITTSVVYLLG VLVFGSSVSE MFIRDKYGQS AMGKLTISEI
481 AWPFPMVILW GCLGATIGAG MQSLTGAPRL LQAIASDDVI PFLKPFRKMD SRGEPIRAIF
541 VTLLICWMGI LIAVIENITA LITQFFLMCY LGVNTACALQ SLLKSPGWRP SFRYFHWSLS
601 MLGAFLCVAV MFISAWHFAL IAIFIGAAVY KYIEYAGAEK EWGDGIRGLG LSAARFALLN
661 LDNKPQHSRN WRPQLLVLLE NTDSPNTQGM LSFVSQLKAG KGLTLVAMCT EGEFARDAQQ
721 ALAQQRNLDA LMKKNKIKGF GDVLVTENIM EGVSCLVQTS GLGALRHNTV VISWPELWST
781 EHSWHVGHRF VSALRACSAA KCAILVPKNV DQYPASNTKV SGHLDVWWVV HDGGLLMLLP
841 FLLRQHKTWK NVVVRLFAIA QLEDNNVQMK TDLEKFLYHL RIEAEVYVIE MPDSDISDYT
901 YERTLKMEER TKLLRSLNKA DREKDLQTHI EEVVRERKLS KINEEEMIAP VDKPLDVVPE
961 DQHETEEKKL GKVESKGVRF SDDSSIDELR KPGNGTLERD NEERRRKRRY NVHKMHTAVK
1021 LNELMRQKSG DSQLLIVNLP GPPDQDSDVY YMEFIEALTE GLNRVLLVRG TGAEVVTIYS
//