LOCUS WKY03461.1 947 aa PRT INV 31-JUL-2023
DEFINITION Nippostrongylus brasiliensis hypothetical protein protein.
ACCESSION CP130735-286
PROTEIN_ID WKY03461.1
SOURCE Nippostrongylus brasiliensis
ORGANISM Nippostrongylus brasiliensis
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
Rhabditina; Rhabditomorpha; Strongyloidea; Heligmosomidae;
Nippostrongylus.
REFERENCE 1 (bases 1 to 50441521)
AUTHORS Schwarz,E.M., Baniya,A., Rodriguez,I.M., Lu,D., Bobardt,S.D.,
Anesko,K., Baker,L., Gouil,Q., Ritchie,M.E., Jex,A.R., Nair,M.G.
and Dillman,A.R.
TITLE A Nippostrongylus brasiliensis chromosomal reference genome and its
transcriptomics
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 50441521)
AUTHORS Schwarz,E.M., Baniya,A., Rodriguez,I.M., Lu,D., Bobardt,S.D.,
Anesko,K., Baker,L., Gouil,Q., Ritchie,M.E., Jex,A.R., Nair,M.G.
and Dillman,A.R.
TITLE Direct Submission
JOURNAL Submitted (16-JUL-2023) Molecular Biology and Genetics, Cornell
University, Biotechnology Bldg., 526 Campus Road, Ithaca, NY 14853,
USA
COMMENT ##Genome-Assembly-Data-START##
Assembly Date :: 03-JUN-2022
Assembly Method :: raven v. 1.7.0; sourmash v. MAR-2022;
racon v. 1.4.20; POLCA (in MaSuRCA) v.
4.0.8; 3d-dna v. 180419
Assembly Name :: Nippo_1.0
Genome Representation :: Full
Expected Final Version :: Yes
Genome Coverage :: 76.0x
Sequencing Technology :: Oxford Nanopore PromethION; Illumina
HiSeq; Omni-C
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Nippostrongylus brasiliensis"
/mol_type="genomic DNA"
/strain="MIMR"
/db_xref="taxon:27835"
/chromosome="IV"
/sex="pooled male and female"
/tissue_type="Whole animal"
/dev_stage="Adults"
/geo_loc_name="USA: Laboratory of Meera Nair, UC Riverside
School of Medicine, Riverside, CA"
/collection_date="2021/2022"
protein /locus_tag="Q1695_004873"
/note="NIPPO_CHRIV.G8713.T1"
intron_pos 29:0 (1/20)
intron_pos 95:2 (2/20)
intron_pos 154:2 (3/20)
intron_pos 206:1 (4/20)
intron_pos 258:0 (5/20)
intron_pos 310:0 (6/20)
intron_pos 352:0 (7/20)
intron_pos 397:0 (8/20)
intron_pos 434:0 (9/20)
intron_pos 478:0 (10/20)
intron_pos 502:0 (11/20)
intron_pos 557:2 (12/20)
intron_pos 603:0 (13/20)
intron_pos 637:0 (14/20)
intron_pos 678:0 (15/20)
intron_pos 705:0 (16/20)
intron_pos 757:1 (17/20)
intron_pos 822:2 (18/20)
intron_pos 863:0 (19/20)
intron_pos 902:1 (20/20)
BEGIN
1 MELNVKQSGI VDRLVFSTNF KIRNRCMRRT VERYLRNDLS CGLHSCEPCS PLALNVMGKK
61 PNKDQNSLVP GNHAIIVDSE VFMRFIDIFD SELLQNVIIT QNVWEFVKQK AIKVYKKLNK
121 FVYEDKDPRF SVFMSEFHHK TFVKLEPGLT DSLRHEKVLY VCANYLSEHW AGKGIIPVIL
181 CAENDVLARL KSNYGHSYSI KEYVEGIKDP KKRQLLDTMA AYDSSSSGGK IIYENYLSHD
241 EITKGVAQGT IKKGSFAVSR ENYREAYVLV DPGTMTSWFI KGVHCNRAID GDIVAVQLLP
301 EEEWTLPEKK MRLRDVEDLE IKADDEVQEE DDSDEVPKPK RTKLAPIPTA KVVGIMKRNW
361 RPYCGILMRS QLKGARRHLF CPSDRLIPRI RIETEQADIL ENQRIVVSID QWPRDSAYPL
421 GHYVRALGKI GDKVLLLEHD IPHAPFSDGV MDCLPSENWK PDLKPPRVDL RHLTICSVDP
481 LGCTDIDDAL HCRELDNGLL EVGVHIADVT HFVRAGTAID EEAASRATTV YLCDRRIDML
541 PALLSSNLCS LRGGEERYTF SVIWTMTKDA DILDTKYHKS LIRSKAALTY EQAQEFIDNP
601 ELNDDVTIGL RGLMRLSKIL NKRRTANGAL TLASSEVRFD MDWETRTPKA VQEKKHLDTH
661 SMVEEFMLLA NIAVAEKILA EYPDCAMLRR HPVPTEASYK PLVEAAKQRG ISINVSSGKA
721 LADSLNRAVD EKNPMLNRLL RMLTTRCMTQ AVYFSAGTIP VPQYQHFGLA CPIYTHFTSP
781 IRRYADVVVH RLLAACIGAD DIGVGLLSQA NVQKISQNIN YRHKNAQYAG RASVQLNVLT
841 YFQGREETCE GFVMGVRTNG IQVFVPKYGL ESVIVLQQGK GTTIDIDESC VRHGDIVVRE
901 LDRVTVRVRL DESNVQRRRI ALDLIEPSTL PGLSVDFDLS ESIGVGI
//