LOCUS WKY03407.1 2153 aa PRT INV 31-JUL-2023
DEFINITION Nippostrongylus brasiliensis hypothetical protein protein.
ACCESSION CP130735-232
PROTEIN_ID WKY03407.1
SOURCE Nippostrongylus brasiliensis
ORGANISM Nippostrongylus brasiliensis
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
Rhabditina; Rhabditomorpha; Strongyloidea; Heligmosomidae;
Nippostrongylus.
REFERENCE 1 (bases 1 to 50441521)
AUTHORS Schwarz,E.M., Baniya,A., Rodriguez,I.M., Lu,D., Bobardt,S.D.,
Anesko,K., Baker,L., Gouil,Q., Ritchie,M.E., Jex,A.R., Nair,M.G.
and Dillman,A.R.
TITLE A Nippostrongylus brasiliensis chromosomal reference genome and its
transcriptomics
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 50441521)
AUTHORS Schwarz,E.M., Baniya,A., Rodriguez,I.M., Lu,D., Bobardt,S.D.,
Anesko,K., Baker,L., Gouil,Q., Ritchie,M.E., Jex,A.R., Nair,M.G.
and Dillman,A.R.
TITLE Direct Submission
JOURNAL Submitted (16-JUL-2023) Molecular Biology and Genetics, Cornell
University, Biotechnology Bldg., 526 Campus Road, Ithaca, NY 14853,
USA
COMMENT ##Genome-Assembly-Data-START##
Assembly Date :: 03-JUN-2022
Assembly Method :: raven v. 1.7.0; sourmash v. MAR-2022;
racon v. 1.4.20; POLCA (in MaSuRCA) v.
4.0.8; 3d-dna v. 180419
Assembly Name :: Nippo_1.0
Genome Representation :: Full
Expected Final Version :: Yes
Genome Coverage :: 76.0x
Sequencing Technology :: Oxford Nanopore PromethION; Illumina
HiSeq; Omni-C
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Nippostrongylus brasiliensis"
/mol_type="genomic DNA"
/strain="MIMR"
/db_xref="taxon:27835"
/chromosome="IV"
/sex="pooled male and female"
/tissue_type="Whole animal"
/dev_stage="Adults"
/geo_loc_name="USA: Laboratory of Meera Nair, UC Riverside
School of Medicine, Riverside, CA"
/collection_date="2021/2022"
protein /locus_tag="Q1695_004836"
/note="NIPPO_CHRIV.G8676.T2"
intron_pos 41:1 (1/53)
intron_pos 96:1 (2/53)
intron_pos 136:0 (3/53)
intron_pos 194:0 (4/53)
intron_pos 222:0 (5/53)
intron_pos 248:1 (6/53)
intron_pos 294:0 (7/53)
intron_pos 327:0 (8/53)
intron_pos 371:2 (9/53)
intron_pos 416:0 (10/53)
intron_pos 454:0 (11/53)
intron_pos 485:1 (12/53)
intron_pos 547:0 (13/53)
intron_pos 589:1 (14/53)
intron_pos 617:0 (15/53)
intron_pos 669:0 (16/53)
intron_pos 720:0 (17/53)
intron_pos 770:0 (18/53)
intron_pos 802:2 (19/53)
intron_pos 838:2 (20/53)
intron_pos 900:0 (21/53)
intron_pos 935:0 (22/53)
intron_pos 979:0 (23/53)
intron_pos 1020:0 (24/53)
intron_pos 1055:0 (25/53)
intron_pos 1091:2 (26/53)
intron_pos 1138:0 (27/53)
intron_pos 1169:0 (28/53)
intron_pos 1209:2 (29/53)
intron_pos 1254:2 (30/53)
intron_pos 1296:1 (31/53)
intron_pos 1346:0 (32/53)
intron_pos 1388:0 (33/53)
intron_pos 1432:2 (34/53)
intron_pos 1467:0 (35/53)
intron_pos 1495:0 (36/53)
intron_pos 1521:0 (37/53)
intron_pos 1555:0 (38/53)
intron_pos 1607:0 (39/53)
intron_pos 1643:0 (40/53)
intron_pos 1681:0 (41/53)
intron_pos 1718:1 (42/53)
intron_pos 1744:0 (43/53)
intron_pos 1776:0 (44/53)
intron_pos 1811:1 (45/53)
intron_pos 1857:0 (46/53)
intron_pos 1887:2 (47/53)
intron_pos 1911:0 (48/53)
intron_pos 1949:2 (49/53)
intron_pos 1996:0 (50/53)
intron_pos 2039:2 (51/53)
intron_pos 2066:1 (52/53)
intron_pos 2122:0 (53/53)
BEGIN
1 MRFSVVETDF GDEETKNFGK RDEFVSLTSL YEIKTLATIS GDFDNTENHD PIDEDVPPLV
61 LSESNKQWLA IAAGDDISIF AISFDLEHLF TQPFKHGSNI CGIGWLGDSH ILAAVSSSME
121 VTFLSADLKA ILMTIQLPST SSCQRAFLSS DIVLDVCYLA VAREDGEVFT LSIPNWSLLS
181 SATKETIAES CRQTFGIFET TQAVSKLPLS NIICVSGVIL QVPSEKMPFQ ISELRSSNID
241 FLGNGDTGMK FARVRSCCNN RFAMGLTFDG LFVVTDLWTF STIKIHKLSK DERKETFLDF
301 MFVSQPRIDS NVETMAVVVQ TDDRVEMQVR SMSNLEIIYC VAVNQKTMLL PVSETADRVI
361 LLVESFASKT LSGSDAIKVR EIVEAQPEMK LQRLISRNQL DQAEQFAMQF GLDIQIVYVA
421 KLNYHFAQAA ATDSDEEFAN LMAAFEKVKD HNMVGEVCFS GATTFNSYDK ISSLLTYAKK
481 RAITDSDTID RLLQASYVLA TYRLMHGPEN TSYSSDSLWQ NFVSGVSGEG EWHDLFIYTI
541 SSGLIKEARI LWNRHIASIL PNFNSVDNEE ETEANLVEFF KALRATVIGD ITCWRDIIAF
601 LEFDFVPLCL SKMTKQVSVL LVDFLLELAR SLESLDAENF PLNALHATST FERILRKQVD
661 ETITGTRQAE LAYVGCLLRP DAAGQHSRLR ELDRYSANLA SIERLKTVYN CPLSYNTFVG
721 LNSEQICHQI LQQSVQNPKF MKQNVERFAK QYMAEHNLEP DGTLYRYIEA ESSRSRGVVG
781 ASSAWNDHCL MISETISNQS VRSKAVCMIA KGSRPPWSRR LNEAVQSVLK NPQVDQDIKK
841 SLECVCRRAE LGEMLMSYLI SIGMLDCVLS TEYNFMKLIR FMFTQDRFSF SQRLTDAVKA
901 YDIYCELKEQ HSSSVSLVRI YVLYAEHLQR VNSKELSVVQ FLEEVQADKG EQVLRSLACR
961 LVDGWAREID TAVFIWTEES IAKRRRLISS AISVILRFMN QDPTYMQLYE QLRSIERLQE
1021 NHNMFVTTAH LDSKQWRWAT LKRYIEKQER SLTEIMAFSR VLGMTRDEAS RLSIKLAIDS
1081 GNAIGTLTII RDALRSVPEA SPDLAEVCVH GCEFVLWRLQ ETVGNVEATP EAEIVEQSVD
1141 SIVILSRVLR ILEPITSHSL NLQEAVARMH GYASIFLQVV NQCMLDDTTS DSSSSEKEKS
1201 KEEVTTDERS RIYGVRRRVG VYQMRNEGPL FSKMEAIAHI ASVAQSAVGT EKLEYEARLT
1261 FYNEQVMRWN DLFNFLSLSN QDLLEFQARV YAASLLWWNE VEKRDDLGLR ASVRNICIRS
1321 LQAHPCDLWT PCTLLSSLPP QNIEEVILEL RGIVANRKSP QTMINFLRVV QFASILTQNT
1381 AHAKMLTDTF TKTLWAKRLG KACLPPTLPR KPIEDAIVEF AKQKVDPDMV VGYVDEFCGV
1441 EELPKQMLNY AITLVQSASS SNDEREVKEV PIHPQKAFAA FRDILYTVNP YNYPVIYFII
1501 SQLKSTCDIE DKAFVDGCSS ILNFIMERPR KTSICKDELL WFTNREKQME ADKRDPNVEN
1561 FGAYCRCFFE QGTRPVSFSA TSSFSEENQD NNLYERDVLV ITMPDMAKQR LPFHPFLYLA
1621 PADMERFLVP IVEKELDIYN VLSWQSMLRV VPWLKTPHHF SRTRLLSVAV GKISAEVIAK
1681 GQSLSTSEQI TIKQLLEQRS RNAVVSCVSM CFKKLPLCET KILLLEIGRD VAQQWLMVPD
1741 ESQPMDESER LAVEENVKRL GEAIEKYNTE LILKRSGLYN EKTCDLTENP AELIGYLYSN
1801 CVDWQSEKER ENSLAVIEEL ARANHLANLQ SIQEELVTSW LIADKADDAY AVDPNDTMGN
1861 VDMGVNNAAG DENEVFLLPF FDVSVDRIVY LLKLINMEKI MPELITYLRR DPSTVAGGYR
1921 TIVRAACVLL RAFSEQQLKK ANYSQLKICV DLDAVLYGRL LELAHVDIPL DTFRRQEKSV
1981 VVRGLVAPGV RWTPQLTFLI ASLIVDNDIA DRSVVEMVLN RLQAAQKREM FITLLLFCRQ
2041 EKKLHRAKNL AMLWARAADW SLASIESVTP KLRDEFERWF YFAISCPVEG GRAFDSIRNA
2101 LRARNYTVAA HLIGVVASYA QKSPPLDLST VNPEHELVFG WTTKSMPETM SSA
//