LOCUS WKY03403.1 1655 aa PRT INV 31-JUL-2023
DEFINITION Nippostrongylus brasiliensis hypothetical protein protein.
ACCESSION CP130735-229
PROTEIN_ID WKY03403.1
SOURCE Nippostrongylus brasiliensis
ORGANISM Nippostrongylus brasiliensis
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
Rhabditina; Rhabditomorpha; Strongyloidea; Heligmosomidae;
Nippostrongylus.
REFERENCE 1 (bases 1 to 50441521)
AUTHORS Schwarz,E.M., Baniya,A., Rodriguez,I.M., Lu,D., Bobardt,S.D.,
Anesko,K., Baker,L., Gouil,Q., Ritchie,M.E., Jex,A.R., Nair,M.G.
and Dillman,A.R.
TITLE A Nippostrongylus brasiliensis chromosomal reference genome and its
transcriptomics
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 50441521)
AUTHORS Schwarz,E.M., Baniya,A., Rodriguez,I.M., Lu,D., Bobardt,S.D.,
Anesko,K., Baker,L., Gouil,Q., Ritchie,M.E., Jex,A.R., Nair,M.G.
and Dillman,A.R.
TITLE Direct Submission
JOURNAL Submitted (16-JUL-2023) Molecular Biology and Genetics, Cornell
University, Biotechnology Bldg., 526 Campus Road, Ithaca, NY 14853,
USA
COMMENT ##Genome-Assembly-Data-START##
Assembly Date :: 03-JUN-2022
Assembly Method :: raven v. 1.7.0; sourmash v. MAR-2022;
racon v. 1.4.20; POLCA (in MaSuRCA) v.
4.0.8; 3d-dna v. 180419
Assembly Name :: Nippo_1.0
Genome Representation :: Full
Expected Final Version :: Yes
Genome Coverage :: 76.0x
Sequencing Technology :: Oxford Nanopore PromethION; Illumina
HiSeq; Omni-C
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Nippostrongylus brasiliensis"
/mol_type="genomic DNA"
/strain="MIMR"
/db_xref="taxon:27835"
/chromosome="IV"
/sex="pooled male and female"
/tissue_type="Whole animal"
/dev_stage="Adults"
/geo_loc_name="USA: Laboratory of Meera Nair, UC Riverside
School of Medicine, Riverside, CA"
/collection_date="2021/2022"
protein /locus_tag="Q1695_004835"
/note="NIPPO_CHRIV.G8675.T1"
intron_pos 20:1 (1/38)
intron_pos 87:0 (2/38)
intron_pos 138:0 (3/38)
intron_pos 167:0 (4/38)
intron_pos 196:2 (5/38)
intron_pos 232:2 (6/38)
intron_pos 276:2 (7/38)
intron_pos 312:0 (8/38)
intron_pos 340:0 (9/38)
intron_pos 374:0 (10/38)
intron_pos 421:0 (11/38)
intron_pos 467:0 (12/38)
intron_pos 523:1 (13/38)
intron_pos 565:0 (14/38)
intron_pos 637:0 (15/38)
intron_pos 663:0 (16/38)
intron_pos 709:0 (17/38)
intron_pos 757:2 (18/38)
intron_pos 784:0 (19/38)
intron_pos 829:1 (20/38)
intron_pos 876:2 (21/38)
intron_pos 940:2 (22/38)
intron_pos 997:2 (23/38)
intron_pos 1037:0 (24/38)
intron_pos 1082:1 (25/38)
intron_pos 1118:0 (26/38)
intron_pos 1155:1 (27/38)
intron_pos 1199:0 (28/38)
intron_pos 1260:0 (29/38)
intron_pos 1295:0 (30/38)
intron_pos 1332:0 (31/38)
intron_pos 1380:0 (32/38)
intron_pos 1417:0 (33/38)
intron_pos 1465:0 (34/38)
intron_pos 1494:2 (35/38)
intron_pos 1537:2 (36/38)
intron_pos 1575:0 (37/38)
intron_pos 1623:2 (38/38)
BEGIN
1 MVSQPLILLL IFVNLSVWIV SGAPLTVKPS FLLVDENWPV SDTLPVTICG GSGVQIIAGD
61 PTRFFTVVSL NASCSTLRLN KELDADIEGP DGSVGESFSL VLQGLRRARA TLEIQVVDVN
121 DNPPQFISAP AVISVPEKTP SFSPIATIRT RDADTGVSGM ARFSVDNDMF TVDKAKCRNK
181 ECTTTLRLAK ALDFESQRVH HVVIMAEDGN PHSNRTLTAA HTITIHVTDE NDEPPEFVTD
241 LLQPVQIADT QSIGDVILTL RAIDGDDSTA NSTKIRYSME ANEYLDVDAD SGAVRIKKML
301 PANLELKLKV TAKEDGVDGM ETVEELRVHA PKQGVIEGQV SGDLCNGVVY SAKIKENEAD
361 FEQPLVIRLS KPTDPSTLRI EGGYSAFAVD SEASTSTEIR IVPAETSLVD YEKRKAFEIY
421 LTSPYGRCQV NIEVLDVNDN APRCIHDTFT FYVTENHKPT ILGEVKAIDI DSDQFSPITY
481 TILGDGSELF AISELGEFRS VSPIDREEHD SFDLVVRATD AGGKWTDCPG KVVVRDINDN
541 TPTFEHPEYL IEIDEEKTLK QKLEASDPDI GENGQIVYSL ENVPSGIAVE ASAGIIFIGK
601 LDRDTMDSDS VRLQLRATDR GQPPRSSVTN LTIVVRDIND NWPTFTNSRY SLVLDANISP
661 GGVIGSVQAD DADATSPNNV VRYVSEDARF RIPPTGEVIY EGDGVLSKDT SLEFRVYAVD
721 GGEPPRNTST VVIINEHKSS MQSEHTAQIM LNETKKRKEI IWPNTGMAGY SYEIVSAKSQ
781 GFADQDVMQW LEMDTRTGAI YTKKHPLPPS VKRIQLYISM RKGKREVPVE LNINVVDTSD
841 STPFFAKQTF TAIVSEDSRV GAKLLQVKAE SEAPLTYTLE VVTGPKDVLS IDDEGTIHSK
901 AKLDFESFRK IEGRVVARDP DGNEATANFT IILTDVNDNR PVFVNGSVFT AHIDESAEVG
961 MLLDLPYPLA RDGDDGKFAR LLYSLVGDDG HFKIDKTTSE ITLASELDYE TQRSHSLTVR
1021 CVDNAGEEPF NEVFASVTVL VHDVNDNPPQ IHNSDLSRLT VSEDASPATV ITVISVSDLD
1081 EGGKQSVFLD ANHSLFRVTD EGKLILAEKL DQYAGQRLCS NLTATDSGTP PLSVSVPYCI
1141 TVYPASNNHH TPLIVFPKPN SIHYFDENVD YDELLRIKLL EDEHVQDVVF KFDESFKKDW
1201 EQFTLNASGS LKPNSAFDFE RKPVHELKIL ACRQQNCSSV HVFISVNDRN DNCPFFPSQE
1261 VKLSLMENDR SPIPRKIGRV TAAQDADFHS DNTKICYSTE SPIFFFLDPT IPVLYTNQSF
1321 DREQNKEIRF KIFAYDCQLA CRDPHKPSNG TITAVLKIGD VNDNFPKFTE KIYHATVIQG
1381 QASPGSRLTK VSAIDPDDES KGLQYAISGA VRTPKQSYAL SDSPISIDSK TGDLTANIAL
1441 QEASYTFTVT VRDGAGHEDS ATVVISVVTY SHQFELLFDA PFDFISRNEK NIVKLLSNAT
1501 SLTAVVDKCR QKTNFTVVLT HFLDANGEFV EVDHALRKLM SSNGTSRREL SNAFGMRDAE
1561 PVNISGPNAL EAVIFGILIA VFILLVVCLS LFCRQRHSYA RKLRHITAQA AAHHASLSRQ
1621 PTQKVNPYYT TETAPTAVRS LAPPPPPPPL QSTEL
//