LOCUS WKY03244.1 994 aa PRT INV 31-JUL-2023
DEFINITION Nippostrongylus brasiliensis hypothetical protein protein.
ACCESSION CP130735-70
PROTEIN_ID WKY03244.1
SOURCE Nippostrongylus brasiliensis
ORGANISM Nippostrongylus brasiliensis
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
Rhabditina; Rhabditomorpha; Strongyloidea; Heligmosomidae;
Nippostrongylus.
REFERENCE 1 (bases 1 to 50441521)
AUTHORS Schwarz,E.M., Baniya,A., Rodriguez,I.M., Lu,D., Bobardt,S.D.,
Anesko,K., Baker,L., Gouil,Q., Ritchie,M.E., Jex,A.R., Nair,M.G.
and Dillman,A.R.
TITLE A Nippostrongylus brasiliensis chromosomal reference genome and its
transcriptomics
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 50441521)
AUTHORS Schwarz,E.M., Baniya,A., Rodriguez,I.M., Lu,D., Bobardt,S.D.,
Anesko,K., Baker,L., Gouil,Q., Ritchie,M.E., Jex,A.R., Nair,M.G.
and Dillman,A.R.
TITLE Direct Submission
JOURNAL Submitted (16-JUL-2023) Molecular Biology and Genetics, Cornell
University, Biotechnology Bldg., 526 Campus Road, Ithaca, NY 14853,
USA
COMMENT ##Genome-Assembly-Data-START##
Assembly Date :: 03-JUN-2022
Assembly Method :: raven v. 1.7.0; sourmash v. MAR-2022;
racon v. 1.4.20; POLCA (in MaSuRCA) v.
4.0.8; 3d-dna v. 180419
Assembly Name :: Nippo_1.0
Genome Representation :: Full
Expected Final Version :: Yes
Genome Coverage :: 76.0x
Sequencing Technology :: Oxford Nanopore PromethION; Illumina
HiSeq; Omni-C
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Nippostrongylus brasiliensis"
/mol_type="genomic DNA"
/strain="MIMR"
/db_xref="taxon:27835"
/chromosome="IV"
/sex="pooled male and female"
/tissue_type="Whole animal"
/dev_stage="Adults"
/geo_loc_name="USA: Laboratory of Meera Nair, UC Riverside
School of Medicine, Riverside, CA"
/collection_date="2021/2022"
protein /locus_tag="Q1695_004748"
/note="NIPPO_CHRIV.G8588.T5"
intron_pos 19:0 (1/24)
intron_pos 38:0 (2/24)
intron_pos 65:1 (3/24)
intron_pos 101:0 (4/24)
intron_pos 134:0 (5/24)
intron_pos 188:1 (6/24)
intron_pos 237:2 (7/24)
intron_pos 274:0 (8/24)
intron_pos 320:2 (9/24)
intron_pos 362:2 (10/24)
intron_pos 400:2 (11/24)
intron_pos 434:1 (12/24)
intron_pos 475:2 (13/24)
intron_pos 543:1 (14/24)
intron_pos 591:2 (15/24)
intron_pos 661:1 (16/24)
intron_pos 696:2 (17/24)
intron_pos 735:2 (18/24)
intron_pos 770:0 (19/24)
intron_pos 819:1 (20/24)
intron_pos 855:0 (21/24)
intron_pos 900:0 (22/24)
intron_pos 928:0 (23/24)
intron_pos 985:0 (24/24)
BEGIN
1 MDQWCQSLMA VKQKSPEKAG AADAMLEGTS GAHQWYQMNH HRPTFCNYCR EKLSGLTWHG
61 WSCEICKMKA HKKCMLSITE KCKWTTEFTV PSHLQYISPE NSIVPHQWVE GNLAMSSKCV
121 VCEKVCGSVL KLADWRCLWC ACCVHSSCLP QLGRGCSLGA TSLSVIPPLA VKDVSEQGIA
181 QIRADAIGGE CGGGSPLLVL VNSKSGDNQG QRMIRKFKRL LNPIQVFDII ATGPDFALSF
241 FDALDCFRVL VCGGDGTVGW VLGAFDRLGL HNKCQLAILP LGTGNDLARV LGWGHAFYDD
301 TQLPQLIRTF ERAHTRMLDR WSVLAIEGPQ AIAVRQYEET ITKKVRAVME ADDPGDVFRA
361 VKSLCETVRG LMEKIATTFH KVEQWEREAG RLPSDPITEK CSTLLQKLDV LMSSLSHEEE
421 RVEESGFEPE DDERTASEER QRRDSLVGRA NSLKKALKDI MNIAERGIDQ HNRATGAAAK
481 RDRFRKKRSK TTPSVLKVSS SNVSSSSACT PPASPSLQNR PRHIDYLTVR EAESQLSQTS
541 GIGFSPSQSS NPGLSTFEMG DGTHETPYSL PNGCSDQDVK DTDDEPRYKL SFGRVVPPTP
601 SETREPSTAG ETDRPAVDDS HIERLSHDCL FKPHSDCELY SAEAETSTDI KLSHSDSSIY
661 DRTTEGSSCS RNLDPSYTRP RLKDCKKMHT LSTMKRGLLS TNLAGGSLIA EVLLLNARVL
721 GLGDVSGSRE CHTPLEQYRE LKVMNNYFGI GLDAKIALEF HNKREESDKN FKTRSRSRLF
781 MWYGILGGKE LMYRTYRNLD QRIRLECDGV PIDLPSLQGI VILNIPSYSG GANFWGSAKD
841 DTFTAQSFDD RLLEVVALFG VIHVATSRVP NVVRLQNHRI AQCRHIRIVI MGHDPIPVQV
901 DGEPWLQPPG IMQIVHKNRA QLLVRNPAFD AALKKWEEHK ERTTAPSTPT SMSTSLAAPG
961 EDVPFARRAS EFVQLVESEI AQLGRLVHAL CFTP
//