LOCUS WKY03235.1 1864 aa PRT INV 31-JUL-2023
DEFINITION Nippostrongylus brasiliensis hypothetical protein protein.
ACCESSION CP130735-61
PROTEIN_ID WKY03235.1
SOURCE Nippostrongylus brasiliensis
ORGANISM Nippostrongylus brasiliensis
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
Rhabditina; Rhabditomorpha; Strongyloidea; Heligmosomidae;
Nippostrongylus.
REFERENCE 1 (bases 1 to 50441521)
AUTHORS Schwarz,E.M., Baniya,A., Rodriguez,I.M., Lu,D., Bobardt,S.D.,
Anesko,K., Baker,L., Gouil,Q., Ritchie,M.E., Jex,A.R., Nair,M.G.
and Dillman,A.R.
TITLE A Nippostrongylus brasiliensis chromosomal reference genome and its
transcriptomics
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 50441521)
AUTHORS Schwarz,E.M., Baniya,A., Rodriguez,I.M., Lu,D., Bobardt,S.D.,
Anesko,K., Baker,L., Gouil,Q., Ritchie,M.E., Jex,A.R., Nair,M.G.
and Dillman,A.R.
TITLE Direct Submission
JOURNAL Submitted (16-JUL-2023) Molecular Biology and Genetics, Cornell
University, Biotechnology Bldg., 526 Campus Road, Ithaca, NY 14853,
USA
COMMENT ##Genome-Assembly-Data-START##
Assembly Date :: 03-JUN-2022
Assembly Method :: raven v. 1.7.0; sourmash v. MAR-2022;
racon v. 1.4.20; POLCA (in MaSuRCA) v.
4.0.8; 3d-dna v. 180419
Assembly Name :: Nippo_1.0
Genome Representation :: Full
Expected Final Version :: Yes
Genome Coverage :: 76.0x
Sequencing Technology :: Oxford Nanopore PromethION; Illumina
HiSeq; Omni-C
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Nippostrongylus brasiliensis"
/mol_type="genomic DNA"
/strain="MIMR"
/db_xref="taxon:27835"
/chromosome="IV"
/sex="pooled male and female"
/tissue_type="Whole animal"
/dev_stage="Adults"
/geo_loc_name="USA: Laboratory of Meera Nair, UC Riverside
School of Medicine, Riverside, CA"
/collection_date="2021/2022"
protein /locus_tag="Q1695_004743"
/note="NIPPO_CHRIV.G8583.T1"
intron_pos 2:0 (1/45)
intron_pos 75:2 (2/45)
intron_pos 122:2 (3/45)
intron_pos 181:0 (4/45)
intron_pos 210:0 (5/45)
intron_pos 246:2 (6/45)
intron_pos 283:0 (7/45)
intron_pos 308:2 (8/45)
intron_pos 363:0 (9/45)
intron_pos 399:0 (10/45)
intron_pos 422:2 (11/45)
intron_pos 474:0 (12/45)
intron_pos 533:0 (13/45)
intron_pos 580:2 (14/45)
intron_pos 605:0 (15/45)
intron_pos 639:0 (16/45)
intron_pos 672:0 (17/45)
intron_pos 694:1 (18/45)
intron_pos 723:0 (19/45)
intron_pos 749:0 (20/45)
intron_pos 788:0 (21/45)
intron_pos 835:2 (22/45)
intron_pos 887:1 (23/45)
intron_pos 941:0 (24/45)
intron_pos 980:0 (25/45)
intron_pos 1012:0 (26/45)
intron_pos 1054:0 (27/45)
intron_pos 1085:0 (28/45)
intron_pos 1114:0 (29/45)
intron_pos 1160:2 (30/45)
intron_pos 1205:0 (31/45)
intron_pos 1247:0 (32/45)
intron_pos 1294:2 (33/45)
intron_pos 1356:0 (34/45)
intron_pos 1384:0 (35/45)
intron_pos 1442:0 (36/45)
intron_pos 1474:2 (37/45)
intron_pos 1515:2 (38/45)
intron_pos 1555:0 (39/45)
intron_pos 1605:0 (40/45)
intron_pos 1648:2 (41/45)
intron_pos 1690:0 (42/45)
intron_pos 1740:0 (43/45)
intron_pos 1767:0 (44/45)
intron_pos 1822:0 (45/45)
BEGIN
1 MKPSFVVVDA GVHIAREKER KFGRHEKKYV LLPYHRQLSD YLDEQFEHIK HGLVVSVLVN
61 ENRPALRNYI YGLRKFVEAH GFRFSRDDHV KLIKLLYLIM VKKDQWHDVV HYAAKSLEKL
121 INKCYFTHED LTLDWQPVYD LYYGATFGKL DDIDGGRIRT ATFRLKRFYK PSESPKIWEK
181 VQVLLAPRYS AKEFCEMGLL FLNIRMSTED HKKYGAALWF PTMWKMYEVV EMGRKWGDDL
241 PSFFATLIYH NPDFMDWRPL YETIFTRIIR ALGFCIREGK IVIGDGSGSS SLDGFARFVS
301 STIGGPLSCQ KQLEKMMRTI EPFMHPSNEG DHTGMVLAFL QYLIREFLGR FEDERVKKKK
361 RKVPQAYYLS DVDIKLFVEA LLQTVLYSLY SKDGKSYDLP SKLLMMLGYL QPGIVFPKFL
421 DNVYPAMFAV CEPHRLTQTL DCMFELMFII ACDNKPDTVR RKMEKDWVQE MEKTRSPSSP
481 INDYSLQKLS AEHEWKIKEN FTTFRFHLFY FLEILIEGID INDVAKANIS IHNMTLIFYI
541 TPILDYSECV KYHKDLTPDE KSLCLLSRRL PVLAEMALDR ILGIIQCLGV TAPKDSSSAL
601 GSFKDETTKE SDEEKVLKKG IDRCVTALFT NAEHLVTKKL AEKVLNFVKT NQFETQLATD
661 MISSLIAQMT YASPTFWLPF AEHARKNLRE LLTPEAKAAE DLETSTQWYV TLAGSLLSST
721 NENYIQHQNV CCEIIELLLS CKSKVAYISG SIGLWYMLYM LSRMYPENTR YVGDRLSRPL
781 KEWVPIREWG KQYDMSEVKM AWYVPGAKAK ALVEELLKKF LFPVVESLKN KDMDRDSLKK
841 AFNILTFGFS GGATCFEMPK SPVFVSAHTV LPWFKPDSIN PAVQHWDIKT PSGGNFREYL
901 VNILEEVIER LVASKREHSQ VLSSISKILQ SVIDTSYPDS SQLDTANGEH SDIYAYMTTP
961 ATKKRHIFVF ESQSYVAHMR NVVELPAREF TAFHLRVLHL LARLALNDYS EVRGEAQSVL
1021 SSLFAEYAIA KETIVDDILP TLTNPQSTRE QLKGALCVIS QSSWATSSTV PTKTKVWKAI
1081 IEMKVVDYPD VIEMYDDLWN DIGKLQKPAR KHYDCPKLMD YCSKWFATLS KKGVWAKYKD
1141 NKVLEAGKEA RAARKNQSAK EQETLVETLL ELFARKDLLH TRIKLCRAML WRCQKEKAGI
1201 KTIKILLGKF IDDEEYLRER SADELSFWLK KNKPKTIRMN WECPKKVELG FLKCGLRMDN
1261 LPLVYDSENL PRTEEKWNKT VFFSKPHGSY KWPHHISVVV YASKPQLNRT PLSECEKAIV
1321 AAFEDEALYR KWIELLLIEK HDSKDVNDNT VWMVKYLLRN FPDSKIIYNR ITGTLKELLK
1381 SRKRAEQRLA AEIFTGVAKG TKYIGFKRLE QLWTWLAPAI DNLYDHMNAD AYMAWTSCIT
1441 DVLHRDDTRR FWWMVEQFLN SMTRPAPTAW HQGIRSQVLL ATDWRETETR RRICEIAWKD
1501 LPKATIETQR IGISTSLRHV CTVLEANMNN DLKSLPKRFQ LESVDTWLQR FEKKLDIAGS
1561 SKSQSDTAIQ KLKLPECDAA LKLENGAAAK AENVSSLSPE KMAEPLIYLR TLLEFLLQYY
1621 EDCITCLTPG IVSLFPMLIE YANEDESEQN ESFKDTDIKN NATVLMHEYM SSLLVTEKFA
1681 DSLLNVVIKT FHRTCLWRVR VSVLKFLQVL AFSNVYVFEV NQRPKTVVKL LFEAITDKQM
1741 EVRIEASRCM MTLIHLDYIK VDKYVMSSIN ACSESKEHAT LHGAVLAMGA VVMAHPYSTP
1801 PFVVPMLKSL YSFTSLSTEL QRAATAALRE FRRSHREEWE KTAKIIGSDL VYKIENATAP
1861 IYYA
//