LOCUS WKY03231.1 1885 aa PRT INV 31-JUL-2023
DEFINITION Nippostrongylus brasiliensis hypothetical protein protein.
ACCESSION CP130735-54
PROTEIN_ID WKY03231.1
SOURCE Nippostrongylus brasiliensis
ORGANISM Nippostrongylus brasiliensis
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
Rhabditina; Rhabditomorpha; Strongyloidea; Heligmosomidae;
Nippostrongylus.
REFERENCE 1 (bases 1 to 50441521)
AUTHORS Schwarz,E.M., Baniya,A., Rodriguez,I.M., Lu,D., Bobardt,S.D.,
Anesko,K., Baker,L., Gouil,Q., Ritchie,M.E., Jex,A.R., Nair,M.G.
and Dillman,A.R.
TITLE A Nippostrongylus brasiliensis chromosomal reference genome and its
transcriptomics
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 50441521)
AUTHORS Schwarz,E.M., Baniya,A., Rodriguez,I.M., Lu,D., Bobardt,S.D.,
Anesko,K., Baker,L., Gouil,Q., Ritchie,M.E., Jex,A.R., Nair,M.G.
and Dillman,A.R.
TITLE Direct Submission
JOURNAL Submitted (16-JUL-2023) Molecular Biology and Genetics, Cornell
University, Biotechnology Bldg., 526 Campus Road, Ithaca, NY 14853,
USA
COMMENT ##Genome-Assembly-Data-START##
Assembly Date :: 03-JUN-2022
Assembly Method :: raven v. 1.7.0; sourmash v. MAR-2022;
racon v. 1.4.20; POLCA (in MaSuRCA) v.
4.0.8; 3d-dna v. 180419
Assembly Name :: Nippo_1.0
Genome Representation :: Full
Expected Final Version :: Yes
Genome Coverage :: 76.0x
Sequencing Technology :: Oxford Nanopore PromethION; Illumina
HiSeq; Omni-C
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Nippostrongylus brasiliensis"
/mol_type="genomic DNA"
/strain="MIMR"
/db_xref="taxon:27835"
/chromosome="IV"
/sex="pooled male and female"
/tissue_type="Whole animal"
/dev_stage="Adults"
/geo_loc_name="USA: Laboratory of Meera Nair, UC Riverside
School of Medicine, Riverside, CA"
/collection_date="2021/2022"
protein /locus_tag="Q1695_004740"
/note="NIPPO_CHRIV.G8580.T3"
intron_pos 96:2 (1/44)
intron_pos 143:2 (2/44)
intron_pos 202:0 (3/44)
intron_pos 231:0 (4/44)
intron_pos 267:2 (5/44)
intron_pos 304:0 (6/44)
intron_pos 330:2 (7/44)
intron_pos 385:0 (8/44)
intron_pos 423:0 (9/44)
intron_pos 446:2 (10/44)
intron_pos 498:0 (11/44)
intron_pos 557:0 (12/44)
intron_pos 603:2 (13/44)
intron_pos 628:0 (14/44)
intron_pos 662:0 (15/44)
intron_pos 695:0 (16/44)
intron_pos 717:1 (17/44)
intron_pos 746:0 (18/44)
intron_pos 772:0 (19/44)
intron_pos 811:0 (20/44)
intron_pos 858:2 (21/44)
intron_pos 910:1 (22/44)
intron_pos 964:0 (23/44)
intron_pos 1003:0 (24/44)
intron_pos 1034:0 (25/44)
intron_pos 1076:0 (26/44)
intron_pos 1107:0 (27/44)
intron_pos 1136:0 (28/44)
intron_pos 1182:2 (29/44)
intron_pos 1227:0 (30/44)
intron_pos 1268:0 (31/44)
intron_pos 1317:2 (32/44)
intron_pos 1379:0 (33/44)
intron_pos 1407:0 (34/44)
intron_pos 1465:0 (35/44)
intron_pos 1497:2 (36/44)
intron_pos 1538:2 (37/44)
intron_pos 1578:0 (38/44)
intron_pos 1627:0 (39/44)
intron_pos 1672:2 (40/44)
intron_pos 1711:0 (41/44)
intron_pos 1761:0 (42/44)
intron_pos 1788:0 (43/44)
intron_pos 1843:0 (44/44)
BEGIN
1 MVSRWLPPLS SELLQSCCLS LQKPSFVVVD GAVGVKRDKT RKFGRHEKKF VLLPYHEQLT
61 CELDARFEHI KHGLVIAVLV NEQRPALRNF IFALKTYVTT YGFRFSRDDH LQIIHLLYLI
121 LVRKNQWAEI ITYAAKALED VMQKSYFGYE QLPLDWEPVF ALYHGANYGK IEEVDGKGLR
181 NAVYRLKRFY KPSDTPKIWE KIQIYLSPVY STKEFCDLAL LFLPIKMTTE EHKKFGASLW
241 FKTLWQMYEV VERGDKWGKE LPNLFATLAY NNPDFMDWTP IYDTIFTRAI RAMGLSIREG
301 KVAAGDPPSA SDSLVSLSRV VVATLGGVRG CQSHLERMMK LVEPFMHPSN ESSHTLLVLV
361 FLQNVLTETV NRYKEERIKS HKREVQVPQK YYLTDADLLK FTDTILPSLL YALYTKDGAS
421 SKAPPKMVMI LCSLCPERVF SKVFEHIYAA IFAVDEPHRL TQTLNCLVEL VFLISHDSDP
481 TLKRTQMQKD WISEMERLRP DDSPIAKFSL EKLNQSVDFD MRASLTSFRC HLFYILEMLI
541 DAIDINDVAK AKVAIFNLTL IFYMVPILDY SECIQYHKLT NEEIALCKLS ARLPILAEMA
601 LDKMLNIIQC LSVTAPKDSS SVIGSFKDLA TKDGSEEVVL KKAIDRCVTA IFKNANEMIT
661 QKLGKKMLEF VKTNQFEGSL ATDMIASMVA SMTYTLPTFW KYFAEHVLRN LRIVLTPEMK
721 KSEDLDASAS WFVTLASSLL YTTSENYIQY KDMCIEMIDL LVTCKSKVAY SSGALGLFNS
781 VYMLSRVYPE NSRYMGEKLN RSLKEWIPIR EWSRLYKLED MKMAWHIPSD RGKAVIIEIL
841 NKFLFPVMDQ LKIEHVDRET LKRSFSVMNS IFTGGATSFS LPPSPLFHVS STCLPWFNPN
901 IPNSAVFKLD IQHPTGKNVR LMLVELFEKI MNRAETSHRE HTQVLCMICT MLHYIIHTNY
961 LDSSELQSAI EEQTEIFSYL TDPIKKDYPA YVYESAAYVC HMRNATIAAT ALTDFHLRVI
1021 RLLVRLSVNT YAEVRLAAQT ELFLVFAEYT AAREAVVDDI VAILMDKKAS KEKVRGALII
1081 IRKAKLATHS TPEAKLKIWR ALLDMQAIET ATLLEVYEEI SNQIGSIQKP TLKHYNCKNL
1141 VSFCEKMFEK LPKTGEWSKF KNKSSLESTR KMQEEKKAKT KQQTKDLVKM LLMQFSRKDI
1201 LYARAKLCRT MLWRCQMEKA GVETIKILLL KLVDDDPLYR ELSQEELAFW LKKNKVKTNR
1261 MDWPCPKRSD DLIELKCGIR PDNMCLAYDS ENLPNTEEKW NNMAFFSKQY GCYKWPKTIN
1321 TVVLASKPQL NRTPLSESEK AIVAAFEDKQ IFTKWVLSLL LEKRDLPEVK ESTVWMVKYI
1381 LRSFPDSKII FNYITGTLRE LLKSRQRAEQ RLAAEFFVGV VSGTKYRGFK TLNEMWKWLA
1441 PAVDQLYDYM NADAYASWFT CVTLVLHRDD SRRYWWLIEQ FLKGMSRRAP TAWHQAVRLT
1501 ALVANQWRET ETRRRICEIA WRNLPKAKIE TQRLGISNAL KNICVILDAN LNNDFKDLPK
1561 RFHLENVDFW LQRFESNLGE TASNRSGQAT PQSSKSGAEM QLSASELSAK LSAAAETSSS
1621 VMSIDVCQIY LRTLLDFLLQ YYEECISSLK PGIVSLFPVL LEYANEDEAE SEYTKDVDIK
1681 YSASLLVHET MSSLLLTPKF ADSFLNVVVQ SFYTTYLWRA KVSVLKFIQV LVFSNIYELE
1741 KGIRPNKVLR LLFDSIIDPQ LEVRTESSRA MFTLILCNYI KVDKELTTYF NDLLKNKSTP
1801 TLHGAILGMG AVVRAHPFST PPEIKPMLRA LCDVTSHNAE LQKAATTALR EFRRTHRDDW
1861 ENTAKVLGSD LVYKIENAIA PVYYA
//